[Biojava-dev] code contribution

[Schreiber, Mark]

Hi Konrad,
 
The BioJava SeqIO model is largely event based. Probably the best way to parse GenBankXML would be to write a SAX parser that passes events to a SequenceBuilder or similar.
 
Good luck, I would be keen to see the final result.
 
- Mark
 

	-----Original Message----- 
	From: Konrad Büssow [mailto:buessow at molgen.mpg.de] 
	Sent: Sat 12/04/2003 2:48 a.m. 
	To: biojava-dev at biojava.org 
	Cc: 
	Subject: [Biojava-dev] code contribution
	
	

	Hello,
	
	I have been using BioJava for a while now and find it very useful. Now I
	would like to contribute code to BioJava.
	I was developing a Java program for parsing the GenBank XML format and
	extraction of open reading frames: http://www.proteinstrukturfabrik.de/orfer
	The source code might be useful for BioJava, but probably I will have to
	re-write it to some extent to make to make it fit into the BioJava
	structure. Any hint how to approach this would be welcome.
	
	Best Regards, Konrad Büssow
	
	
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