[Biojava-dev] Blast SAX parser update

Matthew Pocock matthew_pocock@yahoo.co.uk
Thu, 29 Aug 2002 23:17:38 +0100


Keith,

At the risk of sounding like a cheer leader, you're doing a stearling 
job. Great. I hope I can make it to the genome conference next week and 
buy you a pint at the Jolly Fashist.

Matthew

Keith James wrote:
> Hi folks,
> 
> I've added NCBI Blast 2.2.2 and 2.2.3 to the versions supported in
> strict mode. It turned out that this didn't require changes to the
> parser.
> 
> I generated new test data for all NCBI Blast versions using the same
> queries and databases and made a few diffs. The format differences are
> essentially minor whitespace variations between 2.0.11 and
> 2.2.2/2.2.3. Nevertheless, I've added tests specifically for version
> 2.2.3.
> 
> At some point the ssbind tests will need to be restructured or we'll
> get a combinatorial explosion of classes for different versions of
> NCBI and WU. I'll deal with that later - this is all too dull.
> 
> Keith
> 


-- 
BioJava Consulting LTD - Support and training for BioJava
http://www.biojava.co.uk

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