[Biojava-dev] RE: [Biojava-l] BLAST/Java interface

[Schreiber, Mark]

If I undersand omnigene correctly (which I probably don't) wouldn't you
be able to register web services with it using WDSL or similar?

If that is the case then it doesn't matter too much where the service
comes from right?

- Mark


> -----Original Message-----
> From: Michael L. Heuer [mailto:heuermh@acm.org] 
> Sent: Wednesday, 28 August 2002 4:13 a.m.
> To: Patrick McConnell
> Cc: Schreiber, Mark; biojava-dev@biojava.org
> Subject: Re: [Biojava-dev] RE: [Biojava-l] BLAST/Java interface
> 
> 
> 
> Just to raise an alternative point of view -- perhaps biojava 
> isn't the best place for web services and other 
> enterprise-style projects.  Maybe the Omnigene project 
> (http://omnigene.sourceforge.net) might be a better fit.  I 
> know Brian is working on developing more analysis web 
> services to build on their DAS support.
> 
>    michael
> 
> 
> On Tue, 27 Aug 2002, Patrick McConnell wrote:
> 
> >
> > OK.  So, what do I need to do to get a read/write account 
> on the CVS?  
> > What part of the biojava tree should I build the web services stuff 
> > on?
> >
> > -Patrick
> >
> >
> >
> >
> >
> > "Schreiber, Mark" <mark.schreiber@agresearch.co.nz> on 08/26/2002 
> > 05:24:44 PM
> >
> > To:    "Patrick McConnell" <MCCon012@mc.duke.edu>
> > cc:    <biojava-dev@biojava.org>
> >
> > Subject:    RE: [Biojava-l] BLAST/Java interface
> >
> >
> > I for one would be very keen to see BioJava be able to 
> connect to both 
> > public and in-house web services. It seems you have the 
> experience so, 
> > in the tradition of open-source, if you code it it will be our 
> > standard
> > :)
> >
> > - Mark
> >
> > > If this looks like a promising project, I would like to 
> volunteer my 
> > > time to help develop web services for BioJava. I have developed 
> > > many, many web services for internal use here, which 
> would be good 
> > > candidates for porting to BioJava. Also, I am involved in 
> a project 
> > > for developing web services to sit atop a grid at the 
> North Carolina 
> > > Supercomputing Center.  We will also be developing web portals
> > > (JSP/servlets) for the web services.  These could also be
> > > ported to BioJava.  (For instance, I have developed a JSP
> > > script that formats NCBI blast XML to a web page that looks
> > > nearly identicle to NCBI's output.)
> > >
> > > Let me know,
> > >
> > > -Patrick McConnell
> > > Duke Bioinformatics Shared Resource
> > >
> > 
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