[MOBY-l] Local BioMOBY Central - Ontology test fails

[Mark Wilkinson]

Can you confirm that your test suite runs when you have NO environment  
variables set?  (i.e. when you are connecting to my default mobycentral in  
all cases)?


M



On Sun, 11 Feb 2007 16:41:18 -0800, Rajasekar Karthik  
<karthik085 at gmail.com> wrote:

> Also, I forgot to add:
>> From dashboard, I am able to retrieve/register/deregister services,
> namespaces, data types... from localhost. In data types, I can see  
> Object,
> String, Integer, Float...so, it does exist. Testcases in
> Client-OntologyServer.t like 11-15 tests for that.
>
>>
>> I do have all the environment variables as suggested. Still, the same
>> results. :-(
>> I tested against the default  
>> http://mobycentral.icapture.ubc.ca/cgi-bin/On
>>
>> tologyServer.cgi and 4 testcases fail:
>>
>> ok 1 - use MOBY::Client::OntologyServer;
>> ok 2 - MOBY::Client::OntologyServer->can(...)
>> ok 3
>> ok 4
>> ok 5
>> ok 6
>> ok 7
>> not ok 8 # TODO How come I cant' set proxy back to its original value?
>> #   Failed (TODO) test at t/Client-OntologyServer.t line 101.
>> #          got: 'bar'
>> #     expected: undef
>> # Couldn't return proxy to previous value
>> not ok 9
>> #   Failed test at t/Client-OntologyServer.t line 111.
>> #          got: '0'
>> #     expected: '1'
>> # Namespace 'Rub1' reported erroneously as non-existent.
>> not ok 10
>> #   Failed test at t/Client-OntologyServer.t line 111.
>> #          got: '0'
>> #     expected: '1'
>> # Namespace 'Rub2' reported erroneously as non-existent.
>> ok 11
>> ok 12
>> ok 13
>> ok 14
>> ok 15
>> not ok 16
>> #   Failed test at t/Client-OntologyServer.t line 127.
>> #          got: '0'
>> #     expected: '1'
>> # Service type 'Rub1' reported erroneously as non-existent.
>> not ok 17
>> #   Failed test at t/Client-OntologyServer.t line 127.
>> #          got: '0'
>> #     expected: '1'
>> # Service type 'Rub2' reported erroneously as non-existent.
>> ok 18 - MOBY::Client::OntologyServer->can('relationshipExists')
>> ok 19
>> ok 20
>> ok 21
>> ok 22
>> ok 23
>> ok 24
>> ok 25
>> ok 26
>> ok 27
>> 1..27
>> # Looks like you failed 4 tests of 27.
>>
>>
>> On 2/11/07, Mark Wilkinson <markw at illuminae.com > wrote:
>> >
>> > Hi Karthik,
>> >
>> > Make sure that you have all three environment variables set:
>> >
>> > MOBY_SERVER=http://localhost/path/to/MOBY-Central.pl
>> > MOBY_URI=http://localhost/MOBY/Central
>> > MOBY_ONTOLOGYSERVER= http://localhost/path/to/OntologyServer.cgi
>> >
>> > That should solve your problems... I hope :-)
>> >
>> > M
>> >
>> >
>> >
>> >
>> > On Sun, 11 Feb 2007 14:18:25 -0800, Rajasekar Karthik
>> > <karthik085 at gmail.com> wrote:
>> >
>> > > Hi,
>> > >
>> > > I am setting up a local biomoby central. I am following this  
>> document:
>> > >
>> >  
>> http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Docs/MOBY-S_API/InstallingLocalMOBYCentral.html
>> > >
>> > > 1. When I do, make test - all test cases passes for all the files,
>> > except
>> > > for Client-OntologyServer.t . I attached my test results for  
>> all('make
>> > > test')
>> > > and for Client-OntologyServer.t('perl t/Client-OntologyServer.t')
>> > along
>> > > this
>> > > mail. Here is just the summary:
>> > >
>> > > Failed Test               Stat Wstat Total Fail  List of Failed
>> > >
>> >  
>> -------------------------------------------------------------------------------
>> > > t/Client-OntologyServer.t   13  3328    27   13  9-17 19-22
>> > > 1 test skipped.
>> > > Failed 1/13 test scripts. 13/381 subtests failed.
>> > > Files=13, Tests=381, 79 wallclock secs ( 7.82 cusr +  0.70 csys =
>> > 8.52
>> > > CPU)
>> > > Failed 1/13 test programs. 13/381 subtests failed.
>> > > make: *** [test_dynamic] Error 255
>> > >
>> > >
>> > > 2. t/Config file is being skipped for testing. It says:
>> > > all skipped: Required only when you have your own local MOBY Central
>> > > How do I test t/Config?
>> > >
>> > > Any help would be appreciated.
>> > >
>> >
>> >
>> >
>> > --
>> > Using Opera's revolutionary e-mail client: http://www.opera.com/mail/
>> >
>>
>>
>>
>> --
>> Best Regards,
>> Rajasekar Karthik
>> karthik085 at gmail.com
>>
>
>
>



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