[MOBY-l] Local BioMOBY Central - Ontology test fails

[Rajasekar Karthik]

Also, I forgot to add:
>From dashboard, I am able to retrieve/register/deregister services,
namespaces, data types... from localhost. In data types, I can see Object,
String, Integer, Float...so, it does exist. Testcases in
Client-OntologyServer.t like 11-15 tests for that.

>
> I do have all the environment variables as suggested. Still, the same
> results. :-(
> I tested against the default http://mobycentral.icapture.ubc.ca/cgi-bin/On
>
> tologyServer.cgi and 4 testcases fail:
>
> ok 1 - use MOBY::Client::OntologyServer;
> ok 2 - MOBY::Client::OntologyServer->can(...)
> ok 3
> ok 4
> ok 5
> ok 6
> ok 7
> not ok 8 # TODO How come I cant' set proxy back to its original value?
> #   Failed (TODO) test at t/Client-OntologyServer.t line 101.
> #          got: 'bar'
> #     expected: undef
> # Couldn't return proxy to previous value
> not ok 9
> #   Failed test at t/Client-OntologyServer.t line 111.
> #          got: '0'
> #     expected: '1'
> # Namespace 'Rub1' reported erroneously as non-existent.
> not ok 10
> #   Failed test at t/Client-OntologyServer.t line 111.
> #          got: '0'
> #     expected: '1'
> # Namespace 'Rub2' reported erroneously as non-existent.
> ok 11
> ok 12
> ok 13
> ok 14
> ok 15
> not ok 16
> #   Failed test at t/Client-OntologyServer.t line 127.
> #          got: '0'
> #     expected: '1'
> # Service type 'Rub1' reported erroneously as non-existent.
> not ok 17
> #   Failed test at t/Client-OntologyServer.t line 127.
> #          got: '0'
> #     expected: '1'
> # Service type 'Rub2' reported erroneously as non-existent.
> ok 18 - MOBY::Client::OntologyServer->can('relationshipExists')
> ok 19
> ok 20
> ok 21
> ok 22
> ok 23
> ok 24
> ok 25
> ok 26
> ok 27
> 1..27
> # Looks like you failed 4 tests of 27.
>
>
> On 2/11/07, Mark Wilkinson <markw at illuminae.com > wrote:
> >
> > Hi Karthik,
> >
> > Make sure that you have all three environment variables set:
> >
> > MOBY_SERVER=http://localhost/path/to/MOBY-Central.pl
> > MOBY_URI=http://localhost/MOBY/Central
> > MOBY_ONTOLOGYSERVER= http://localhost/path/to/OntologyServer.cgi
> >
> > That should solve your problems... I hope :-)
> >
> > M
> >
> >
> >
> >
> > On Sun, 11 Feb 2007 14:18:25 -0800, Rajasekar Karthik
> > <karthik085 at gmail.com> wrote:
> >
> > > Hi,
> > >
> > > I am setting up a local biomoby central. I am following this document:
> > >
> > http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Docs/MOBY-S_API/InstallingLocalMOBYCentral.html
> > >
> > > 1. When I do, make test - all test cases passes for all the files,
> > except
> > > for Client-OntologyServer.t . I attached my test results for all('make
> > > test')
> > > and for Client-OntologyServer.t('perl t/Client-OntologyServer.t')
> > along
> > > this
> > > mail. Here is just the summary:
> > >
> > > Failed Test               Stat Wstat Total Fail  List of Failed
> > >
> > -------------------------------------------------------------------------------
> > > t/Client-OntologyServer.t   13  3328    27   13  9-17 19-22
> > > 1 test skipped.
> > > Failed 1/13 test scripts. 13/381 subtests failed.
> > > Files=13, Tests=381, 79 wallclock secs ( 7.82 cusr +  0.70 csys =
> > 8.52
> > > CPU)
> > > Failed 1/13 test programs. 13/381 subtests failed.
> > > make: *** [test_dynamic] Error 255
> > >
> > >
> > > 2. t/Config file is being skipped for testing. It says:
> > > all skipped: Required only when you have your own local MOBY Central
> > > How do I test t/Config?
> > >
> > > Any help would be appreciated.
> > >
> >
> >
> >
> > --
> > Using Opera's revolutionary e-mail client: http://www.opera.com/mail/
> >
>
>
>
> --
> Best Regards,
> Rajasekar Karthik
> karthik085 at gmail.com
>



-- 
Best Regards,
Rajasekar Karthik
karthik085 at gmail.com