[MOBY-l] RE: [MOBY-dev] A bug in Taverna 1.2 perhaps related to BioMOBY

Edward Kawas edward.kawas at gmail.com
Mon Aug 8 13:42:55 UTC 2005


Hi,

I think that that has been fixed. I actually noticed that
bug when using the Planet workflows. So, like I said, it
should be fixed.

Out of curiosity, did you cvs build or download a
prepackaged Taverna?

Thanks,

Eddie

> -----Original Message-----
> From: moby-dev-bounces at portal.open-bio.org [mailto:moby-
> dev-bounces at portal.open-bio.org] On Behalf Of José María
> Fernández González
> Sent: Friday, August 05, 2005 12:10 PM
> To: taverna-users at lists.sourceforge.net; moby-
> l at biomoby.org; mobydev; taverna-
> hackers at lists.sourceforge.net
> Subject: [MOBY-dev] A bug in Taverna 1.2 perhaps related
> to BioMOBY
> 
> Hi everybody,
> 	I don't like crossposting, but I don't know if the
> bug I have found
> today is from the Taverna 1.2 core or the MOBY plugin.
> 
> 	The bug is pretty simple: if you create/load a
> workflow which has a
> service whose name in the workflow is different from the
> service name,
> Taverna does not use the official service name when it is
> invoked.
> Instead, it uses the name given to the service in the
> workflow! The same
> workflow works flawlessly when it is loaded and run in
> Taverna 1.1.
> 
> 	I have discovered the bug with a MOBY service (see
> the sample workflow
> ja5.xml, and the reports taverna-1.1-report.xml and
> taverna-1.2-report.xml), so I don't know which has the
> blame...
> 
> 	This bug should arise when one service is used more
> than once, which is
> very common in real workflows!
> 
> 	Best Regards,
> 		José María Fernández
> --
> José María Fernández González		e-mail:
> jmfernandez at cnb.uam.es
> Tlfn:	(+34) 91 585 54 50		Fax:	(+34) 91 585
45
> 06
> Grupo de Diseño de Proteinas		Protein Design Group
> Centro Nacional de Biotecnología	National Center of
> Biotechnology
> C.P.: 28049				Zip Code: 28049
> C/. Darwin nº 3 (Campus Cantoblanco, U. Autónoma), Madrid
> (Spain)





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