[MOBY-dev] Perl API and BioMOBY Central WSDL: BioMOBY with new"stable" SOAP::Lite broken...

[Edward Kawas]

Hi,

I think that our problem was solved by modifying the url portion of
xmlns="http://www.w3.org/2000/10/XMLSchema" to
xmlns:xsd="http://www.w3.org/1999/XMLSchema"

Is this the 'fix' you are asking about?

Eddie

> -----Original Message-----
> From: moby-dev-bounces at biomoby.org 
> [mailto:moby-dev-bounces at biomoby.org] On Behalf Of Mark Wilkinson
> Sent: Monday, January 30, 2006 8:03 AM
> To: Core developer announcements
> Subject: Re: [MOBY-dev] Perl API and BioMOBY Central WSDL: 
> BioMOBY with new"stable" SOAP::Lite broken...
> 
> Sounds to me like SOAP::Lite is not using namespaces 
> correctly... they're supposed to determine the meaning of the 
> namespace from the document, rather than imposing it on the document.
> 
> If that interpretation of the problem were true, then the fix 
> should be in S::L, not Moby::Central...  Am I 
> mis-interpreting your bug report?
> 
> I read your post on the SOAP::Lite group - Eddie and I have 
> noticed that error before (though it was in the context of 
> service-instance response errors, not registry errors.  I 
> can't recall how we fixed it... it was in mid-october 
> sometime (we were not having the conversation on-list,
> however...)
> 
> Eddie, can you go back in time and see what we did to solve 
> the anyURI problem?
> 
> M
> 
> 
> 
> 
> 
> On Mon, 30 Jan 2006 05:32:04 -0800, Pieter Neerincx  
> <Pieter.Neerincx at wur.nl> wrote:
> 
> > Hi all,
> >
> > After quite some time there is finally an updated 
> SOAP::Lite. I never
> > got the BioMOBY stuff working with the previous beta's, so I was
> > stuck on S::L 0.60. But now there is 0.66 and 0.67 was already
> > submitted to CPAN. And 0.68 might be there by the time you 
> read this.
> > It's been a while since the last "stable" versions of S::L and now
> > they are popping up like mushrooms :). Unfortunately they don't work
> > with BioMOBY. I found 2 issues. One of them is clearly a S::L
> > problem, so I mailed to the corresponding list (And for 
> those who are
> > interested, there's a temporary fix in that post as well). For the
> > other one I'm not sure, but I do now it can be fixed easily by a
> > small change in ~moby-live/Perl/MOBY/Central.pm. There is a problem
> > with the WSDL that BioMOBY Central generates. There are several
> > namespaces in this WSDL and on them is prefixed with "soap":
> >
> > $WSDL_TEMPLATE = <<END;
> > <?xml version="1.0"?>
> > <wsdl:definitions name="MOBY_Central_Generated_WSDL"
> >                  targetNamespace="http://biomoby.org/Central.wsdl"
> >                  xmlns:tns="http://biomoby.org/Central.wsdl"
> >                  xmlns:xsd1="http://biomoby.org/CentralXSDs.xsd"
> >                  xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/"
> >                  xmlns:xsd="http://www.w3.org/1999/XMLSchema"
> >                  xmlns="http://schemas.xmlsoap.org/wsdl/"
> >                  xmlns:wsdl="http://schemas.xmlsoap.org/wsdl/">
> > etc.
> >
> > As far as I understand it (after browsing the specs for the 
> different
> > versions of WSDL, SOAP, WSDL SOAP binding etc. that drove me nuts)
> > the "soap" prefixed namespace is for the SOAP binding described by
> > the WSDL document. Unfortunately when S::L is processing 
> the response
> > from BioMOBY Central it thinks the "soap" prefixed namespace is for
> > the SOAP message eventhough the WSDL is wrapped in a CDATA block.
> > Since this namespace is not the valid one for SOAP version 
> 1.1 or 1.2
> > S::L complains that the entire response is in an unsupported version
> > of SOAP :(. Either something has to change in S::L, or we change the
> > prefix of the namespace. As far as I understand the prefixes for
> > namespaces are not standardised and could be anything. In lots of
> > examples I found on the net I saw:
> > xmlns:wsdlsoap="http://schemas.xmlsoap.org/wsdl/soap/",
> > xmlns:soapwsdl="http://schemas.xmlsoap.org/wsdl/soap/" or
> > xmlns:wsoap="http://schemas.xmlsoap.org/wsdl/soap/"
> > instead of:
> > xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/"
> >
> > So what do the others think. Should this be patched in S::L 
> or can we
> > change the prefix for this namespace from soap to for example wsoap?
> >
> > Cheers,
> >
> > Pieter
> >
> >
> >
> > Wageningen University and Research centre (WUR)
> > Laboratory of Bioinformatics
> > Transitorium (building 312) room 1034
> > Dreijenlaan 3
> > 6703 HA Wageningen
> > The Netherlands
> > phone: 0317-483 060
> > fax: 0317-483 584
> > mobile: 06-143 66 783
> > pieter.neerincx at wur.nl
> >
> >
> >
> > _______________________________________________
> > MOBY-dev mailing list
> > MOBY-dev at biomoby.org
> > http://biomoby.org/mailman/listinfo/moby-dev
> 
> 
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