[MOBY-dev] Perl API and BioMOBY Central WSDL: BioMOBY with new "stable" SOAP::Lite broken...

[Mark Wilkinson]

Sounds to me like SOAP::Lite is not using namespaces correctly... they're  
supposed to determine the meaning of the namespace from the document,  
rather than imposing it on the document.

If that interpretation of the problem were true, then the fix should be in  
S::L, not Moby::Central...  Am I mis-interpreting your bug report?

I read your post on the SOAP::Lite group - Eddie and I have noticed that  
error before (though it was in the context of service-instance response  
errors, not registry errors.  I can't recall how we fixed it... it was in  
mid-october sometime (we were not having the conversation on-list,  
however...)

Eddie, can you go back in time and see what we did to solve the anyURI  
problem?

M





On Mon, 30 Jan 2006 05:32:04 -0800, Pieter Neerincx  
<Pieter.Neerincx at wur.nl> wrote:

> Hi all,
>
> After quite some time there is finally an updated SOAP::Lite. I never
> got the BioMOBY stuff working with the previous beta's, so I was
> stuck on S::L 0.60. But now there is 0.66 and 0.67 was already
> submitted to CPAN. And 0.68 might be there by the time you read this.
> It's been a while since the last "stable" versions of S::L and now
> they are popping up like mushrooms :). Unfortunately they don't work
> with BioMOBY. I found 2 issues. One of them is clearly a S::L
> problem, so I mailed to the corresponding list (And for those who are
> interested, there's a temporary fix in that post as well). For the
> other one I'm not sure, but I do now it can be fixed easily by a
> small change in ~moby-live/Perl/MOBY/Central.pm. There is a problem
> with the WSDL that BioMOBY Central generates. There are several
> namespaces in this WSDL and on them is prefixed with "soap":
>
> $WSDL_TEMPLATE = <<END;
> <?xml version="1.0"?>
> <wsdl:definitions name="MOBY_Central_Generated_WSDL"
>                  targetNamespace="http://biomoby.org/Central.wsdl"
>                  xmlns:tns="http://biomoby.org/Central.wsdl"
>                  xmlns:xsd1="http://biomoby.org/CentralXSDs.xsd"
>                  xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/"
>                  xmlns:xsd="http://www.w3.org/1999/XMLSchema"
>                  xmlns="http://schemas.xmlsoap.org/wsdl/"
>                  xmlns:wsdl="http://schemas.xmlsoap.org/wsdl/">
> etc.
>
> As far as I understand it (after browsing the specs for the different
> versions of WSDL, SOAP, WSDL SOAP binding etc. that drove me nuts)
> the "soap" prefixed namespace is for the SOAP binding described by
> the WSDL document. Unfortunately when S::L is processing the response
> from BioMOBY Central it thinks the "soap" prefixed namespace is for
> the SOAP message eventhough the WSDL is wrapped in a CDATA block.
> Since this namespace is not the valid one for SOAP version 1.1 or 1.2
> S::L complains that the entire response is in an unsupported version
> of SOAP :(. Either something has to change in S::L, or we change the
> prefix of the namespace. As far as I understand the prefixes for
> namespaces are not standardised and could be anything. In lots of
> examples I found on the net I saw:
> xmlns:wsdlsoap="http://schemas.xmlsoap.org/wsdl/soap/",
> xmlns:soapwsdl="http://schemas.xmlsoap.org/wsdl/soap/" or
> xmlns:wsoap="http://schemas.xmlsoap.org/wsdl/soap/"
> instead of:
> xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/"
>
> So what do the others think. Should this be patched in S::L or can we
> change the prefix for this namespace from soap to for example wsoap?
>
> Cheers,
>
> Pieter
>
>
>
> Wageningen University and Research centre (WUR)
> Laboratory of Bioinformatics
> Transitorium (building 312) room 1034
> Dreijenlaan 3
> 6703 HA Wageningen
> The Netherlands
> phone: 0317-483 060
> fax: 0317-483 584
> mobile: 06-143 66 783
> pieter.neerincx at wur.nl
>
>
>
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