[MOBY-dev] Moby objects in Taverna. Where do they come from?

[Edward Kawas]

Hi Pieter,

I have been toying around with your endpoint. I noticed that
the URL you gave earlier for the Object RDF was inconsistent
with what was retrieved from the API call
getResourceLocation(or something like that ...). 

I think that this occurred when you opened up your endpoint
and perhaps forgot to modify it in your mobycentral.conf
file (does https://bioinfw05:somePort/... resolve on your
machine?). 

The plugin utilizes the API call and hence wouldn't be able
to create a personalized Mobycentral processor (Moby
services and data types) list in Taverna without it.

Once I utilized the URLs that you specified in this message,
everything went as it should. I was able to use your
processors, etc.

I am uploading another version (I tweaked some of the logic)
of the plugin in about 5 minutes. Word on the street is that
Taverna 1.3 is going to be available later on this week
(Friday?) and so that version most likely would be the one
you would want to use. 

In addition, if you notice anything out of the ordinary,
please let me know ASAP so that I can correct it in time for
the much anticipated release.

Thanks,

Eddie

> -----Original Message-----
> From: moby-dev-bounces at portal.open-bio.org [mailto:moby-
> dev-bounces at portal.open-bio.org] On Behalf Of Pieter
> Neerincx
> Sent: Monday, September 26, 2005 4:28 PM
> To: Core developer announcements
> Subject: Re: [MOBY-dev] Moby objects in Taverna. Where do
> they come from?
> 
> 
> On  26Sep2005, at 16:56, Edward Kawas wrote:
> 
> > Hi Pieter,
> >
> >
> >> When I append my local central to my mygrid.properties
> file
> >> for Taverna, I have the old behaviour: hence services
> from
> >> my local central, but objects from  the central
central.
> >>
> >
> > Where did you get this version of Taverna? Is it the one
> > from their homepage?
> 
> No, I've been testing with the version you put up at the
> URL
> mentioned below.
> 
> > If so, have you tried downloading the
> > one that I put up at
> > http://bioinfo.icapture.ubc.ca/ekawas/taverna-workbench-
> 1.2.zip?
> > Also, is it possible to post your Mobycentral endpoint
> so
> > that I could see how things work?
> 
> Yes, sure. I have now temporarily disabled the SSL
> requirement, so
> everything should work nicely over our firewall using port
> 80 :). as
> long as I'm testing I don't need the HTTPS, but some of
> the people
> that are using my services on a production server do.
> 
> My test MOBY Central endpoint is at:
> http://137.224.52.237/phenolink/
> biomoby/central/cgi-bin/MOBY-Central.pl
> My test RESOURCES script is at:
> http://137.224.52.237/RESOURCES/MOBY-S/
> 
> Hope this helps,
> 
> Pieter
> 
> >
> > Thanks,
> >
> > Eddie
> >
> > _______________________________________________
> > MOBY-dev mailing list
> > MOBY-dev at biomoby.org
> > http://www.biomoby.org/mailman/listinfo/moby-dev
> >
> 
> Wageningen University and Research centre (WUR)
> Laboratory of Bioinformatics
> Transitorium (building 312) room 1038
> Dreijenlaan 3
> 6703 HA Wageningen
> phone: 0317-484 706
> fax: 0317-483 584
> mobile: 06-143 66 783
> pieter.neerincx at wur.nl
> 
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