[MOBY-dev] [moby] setting up a MOBY central registry

[Anacleto, Mylah Rystie (IRRI)]

Dear Mark,

Thank you for your fast reply.

I got errors in make test, am pasting it below. I will also look at the database...

There is nothing to edit in OntologyServer.cgi? please confirm...

Mylah


# make test
PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/Central...................................ok
t/Client-Central............................ok 1/0


    This is the MOBY Client Central test suite.

    by default this connects to the server at mobycentral.icapture.ubc.ca
    (or whatever the default server is set to in the code)

    If you want to test a different server you must set the following
    ENVIRONEMNT VARABLES:

    MOBY_SERVER='http://your.server.name/path/to/mobycentral.pl'
    MOBY_URI='http://your.server.name/MOBY/Central'


t/Client-Central............................ok 2/0

    For the following tests I will be using the server at:
        http://cropwiki.irri.org/cgi-bin/MOBY-Central.pl


t/Client-Central............................ok 6/0MOBY Configuration file  doesn't exist No such file or directory

 ERROR ERROR ERROR
# Looks like your test died just after 6.
t/Client-Central............................dubious
        Test returned status 255 (wstat 65280, 0xff00)
        after all the subtests completed successfully
t/Client-CollectionArticle..................ok
t/Client-OntologyServer.....................ok 1/0MOBY Configuration file  doesn't exist No such file or directory

 ERROR ERROR ERROR
BEGIN failed--compilation aborted at t/Client-OntologyServer.t line 48.
# Looks like your test died just after 1.
t/Client-OntologyServer.....................dubious
        Test returned status 255 (wstat 65280, 0xff00)
        after all the subtests completed successfully
t/Client-Registration.......................ok
t/Client-SecondaryArticle...................ok
t/Client-Service............................ok 2/0MOBY Configuration file  doesn't exist No such file or directory

 ERROR ERROR ERROR
MOBY Configuration file  doesn't exist No such file or directory

 ERROR ERROR ERROR
END failed--call queue aborted.
# Looks like your test died just after 2.
t/Client-Service............................dubious
        Test returned status 255 (wstat 65280, 0xff00)
        after all the subtests completed successfully
t/Client-ServiceInstance....................ok
t/Client-SimpleArticle......................ok
t/CommonSubs................................ok 2/0MOBY Configuration file  doesn't exist No such file or directory

 ERROR ERROR ERROR
BEGIN failed--compilation aborted at t/CommonSubs.t line 41.
# Looks like your test died just after 2.
t/CommonSubs................................dubious
        Test returned status 255 (wstat 65280, 0xff00)
        after all the subtests completed successfully
t/Config....................................skipped
        all skipped: Required only for local MOBY Central
t/CrossReference............................ok
t/dbConnect.................................ok
t/lsid-authority-ClassResolver..............ok
t/lsid-authority-dbConnect..................ok
t/lsid-authority-Error......................ok
t/lsid-authority-NamespaceResolver..........ok
t/lsid-authority-PredicateResolver..........ok
t/lsid-authority-RDFConfigure...............ok
t/lsid-authority-RelationshipResolver.......ok
t/lsid-authority-ServiceInstanceResolver....skipped
        all skipped: Skip until apparent namespace pollution fixed in ServiceInstanceResolver
t/lsid-authority-ServiceResolver............ok
t/Template..................................skipped
        all skipped: This is just a template
Failed Test               Stat Wstat Total Fail  Failed  List of Failed
-------------------------------------------------------------------------------
t/Client-Central.t         255 65280     6    0   0.00%  ??
t/Client-OntologyServer.t  255 65280     1    0   0.00%  ??
t/Client-Service.t         255 65280     2    0   0.00%  ??
t/CommonSubs.t             255 65280     2    0   0.00%  ??
3 tests skipped.
Failed 4/23 test scripts, 82.61% okay. 0/118 subtests failed, 100.00% okay.
make: *** [test_dynamic] Error 255


-----Original Message-----
From: moby-dev-bounces at biomoby.org on behalf of Mark Wilkinson
Sent: Fri 12/9/2005 12:50 AM
To: Core developer announcements
Subject: Re: [MOBY-dev] [moby]  setting up a MOBY central registry
 
Hi Mylah, 

I need to deprecate that test script because it is out of date.  Please
use the "make test" command as part of your regular make/make install
process to test your installation (note that you will have to do a "make
install" prior to "make test" in order to ensure that the test is using
the most updated libraries)

M



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