[MOBY-dev] A bug in Taverna 1.2 perhaps related to BioMOBY

Edward Kawas edward.kawas at gmail.com
Mon Aug 8 14:54:20 UTC 2005


Actually, give it a try now. It should work as Mark tweeked
it!

Eddie

> -----Original Message-----
> From: moby-dev-bounces at portal.open-bio.org [mailto:moby-
> dev-bounces at portal.open-bio.org] On Behalf Of José María
> Fernández González
> Sent: Monday, August 08, 2005 7:53 AM
> To: Core developer announcements
> Subject: Re: [MOBY-dev] A bug in Taverna 1.2 perhaps
> related to BioMOBY
> 
> Hi Eddie,
> 
> Edward Kawas wrote:
> > Hi,
> >
> > I think that that has been fixed. I actually noticed
> that
> > bug when using the Planet workflows. So, like I said, it
> > should be fixed.
> >
> 
> Yes, Tom told me that on Friday. I was looking at CVS and
> as you have
> said, it seems it is fixed there.
> 
> > Out of curiosity, did you cvs build or download a
> > prepackaged Taverna?
> >
> 
> As you can imagine, I was working on a prepackaged Taverna
> 1.2 version
> :-(. We are working behind a firewall, and I was digging
> as an user how
> much functionality related to MOBY in Taverna 1.2 was
> affected by that
> fact. I realized that problem when I did a worflow with
> two branches,
> both branches with the same service and one of them had to
> be renamed.
> 
> 	What I have seen is that object instances generated
> from the new object
> tree in BioMOBY scavenger use information from
> 
> http://biomoby.org/RESOURCES/MOBY-S/Objects
> 
> so those workflow branches with any of those object
> instantes stalled
> just inside them. I was digging on that URL, and I saw
> that all the
> rdf:about attributes (plus others, like rdf:resource in
> http://biomoby.org/RESOURCES/MOBY-S/Services) were
> referencing your
> Tomcat server at mobycentral.icapture.ubc.ca:8090. Is
> there some
> progress on MOBY Apache server with
> ProxyPass/ProxyPassReverse?
> 
> 	Best Regards,
> 		José María
> 
> --
> José María Fernández González		e-mail:
> jmfernandez at cnb.uam.es
> Tlfn:	(+34) 91 585 54 50		Fax:	(+34) 91 585
45
> 06
> Grupo de Diseño de Proteinas		Protein Design Group
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> Biotechnology
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> (Spain)
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