EMBOSS: abiview

[Suksiri Vichasri Grams]

Hi,

abiview has two options named -startbase and -endbase which can be used 
to limit the analysis to the entered values.

Kindly,

Rudi

On Wednesday, Jan 15, 2003, at 06:31 Asia/Jakarta, Thomas Keller wrote:

> Greetings,
> I'm a new EMBOSS user, so please be gentle.
> I'm using my local installation on a Mac running OS 10.2.1.
> "abiview":  four color plot is generated, but -window option allows 
> more bases, but how does one view for example bases 200-250?
> My home directory .embossrc file looks like this:
> # EMBOSS configuration file for kellert
> set emboss_acdroot /usr/local/biotools/share/EMBOSS/acd
> set emboss_database_dir /usr/local/biotools/data/dbs
>
> I source a file containing the following env variables when I launch a 
> terminal or xterm window:
> set path=(/usr/local/biotools/bin $path)
> setenv MANPATH ${MANPATH}:/usr/local/biotools/man
> setenv WISECONFIGDIR /usr/local/biotools/wisecfg/
> setenv EMBOSS_ACDROOT /usr/local/biotools/share/EMBOSS/acd
> setenv EMBOSS_DATA /usr/local/biotools/share/EMBOSS/data
> setenv PLPLOT_LIB /usr/local/biotools/share/EMBOSS
>
> Thanks,
> Tom K.
>
> Thomas J. Keller, Ph.D.
> Oregon Health & Science University
> MMI Research Core Facility
> 3181 SW Sam Jackson Park Rd.
> Portland, OR, USA, 97239
>
> http://www.ohsu.edu/core
>