[BioSQL-l] how to retrieve specific information from BioSQL database

gang wu gwu at molbio.mgh.harvard.edu
Wed Sep 27 13:53:21 UTC 2006


Hi Everyone,

I finally finished loading some Genbank genome sequences(Arabidopsis 
thaliana and C. elegans) into my MySQL(5.0.19 on Redhad AS 4) BioSQL 
database though the load_seqdatabase.pl works extremely slow(If -debug is turned on, a lot of messages about not able to find adaptor class for 
Bio::Annotation::TypeManager. Is this about the dynamic library loading 
issue mention in one of Hilmar's message?).

Now I'm writing views and stored procedures so other projects can easily 
retrieve specific information. But so far I 
have not figured out how to write a SQL statement to list all genes  of the genomes. Can anyone show me how to get the information or let me know where to find related document? Thanks in advance.

Gang




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