[BioSQL-l] load_ontology.pl Problem

[Raphael A. Bauer]

Hi List,

I encountered a problem parsing the Gene Ontology using Bioperl 1.2.1 
and bioperl-db 0.1 (?).

The parsing of the Gene Ontology Files into a BioSQL Schema worked fine 
many times about 2 Months ago. Today I tried to parse the new GO Files 
(26. April 2004) and got stuck with the follwing message:


Loading ontology Gene Ontology:
         ... terms
Could not store GO:0001529 (elastin):

------------- EXCEPTION  -------------
MSG: create: object (Bio::Ontology::GOterm) failed to insert or to be 
found by unique key
STACK Bio::DB::BioSQL::BasePersistenceAdaptor::create 
/usr/lib/perl5/site_perl/5.8.0/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:207
STACK Bio::DB::BioSQL::BasePersistenceAdaptor::store 
/usr/lib/perl5/site_perl/5.8.0/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:253
STACK Bio::DB::Persistent::PersistentObject::store 
/usr/lib/perl5/site_perl/5.8.0/Bio/DB/Persistent/PersistentObject.pm:270
STACK (eval) load_ontology.pl:489
STACK toplevel load_ontology.pl:471

--------------------------------------


If i try to override the problems with --safe I get about 150 
Errors.(btw. Item GO:0001529 is not in my Biosql DB).

We also tried to use the latest bioperl Version (1.4.1) and get the same 
errors.

Now I wonder what is wrong with my Bioperl Installtion.



Many thanks in advance,

Raphael