[BioRuby-cvs] bioruby/lib/bio/db/pdb chain.rb, 1.1, 1.2 model.rb, 1.1, 1.2 pdb.rb, 1.2, 1.3 residue.rb, 1.1, 1.2

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/db/pdb
In directory pub.open-bio.org:/tmp/cvs-serv17319/lib/bio/db/pdb

Modified Files:
	chain.rb model.rb pdb.rb residue.rb 
Log Message:
* 'alias :foo :bar' is changed to 'alias foo bar'


Index: residue.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/pdb/residue.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** residue.rb	8 Mar 2004 07:30:40 -0000	1.1
--- residue.rb	26 Sep 2005 13:00:08 -0000	1.2
***************
*** 98,102 ****
        end
        #Alias to override AtomFinder#each_atom
!       alias :each_atom :each
        
        #Sorts based on resSeq and iCode if need be
--- 98,102 ----
        end
        #Alias to override AtomFinder#each_atom
!       alias each_atom each
        
        #Sorts based on resSeq and iCode if need be

Index: model.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/pdb/model.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** model.rb	8 Mar 2004 07:30:40 -0000	1.1
--- model.rb	26 Sep 2005 13:00:08 -0000	1.2
***************
*** 72,76 ****
        end
        #Alias to override ChainFinder#each_chain
!       alias :each_chain :each
       
        #Sorts models based on serial number
--- 72,76 ----
        end
        #Alias to override ChainFinder#each_chain
!       alias each_chain each
       
        #Sorts models based on serial number

Index: pdb.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/pdb/pdb.rb,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** pdb.rb	8 Sep 2005 01:22:11 -0000	1.2
--- pdb.rb	26 Sep 2005 13:00:08 -0000	1.3
***************
*** 1217,1221 ****
      end
      #Alias needed for Bio::PDB::ModelFinder
!     alias :each_model :each
      
      #Provides keyed access to the models based on serial number
--- 1217,1221 ----
      end
      #Alias needed for Bio::PDB::ModelFinder
!     alias each_model each
      
      #Provides keyed access to the models based on serial number

Index: chain.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/pdb/chain.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** chain.rb	8 Mar 2004 07:30:40 -0000	1.1
--- chain.rb	26 Sep 2005 13:00:08 -0000	1.2
***************
*** 77,81 ****
        end
        #Alias to override ResidueFinder#each_residue
!       alias :each_residue :each
        
        #Sort based on chain id
--- 77,81 ----
        end
        #Alias to override ResidueFinder#each_residue
!       alias each_residue each
        
        #Sort based on chain id