[BioRuby-cvs] bioruby/lib/bio/io brdb.rb, 1.3, 1.4 das.rb, 1.8, 1.9 ddbjxml.rb, 1.5, 1.6 fastacmd.rb, 1.7, 1.8 flatfile.rb, 1.36, 1.37 higet.rb, 1.1, 1.2 keggapi.rb, 1.8, 1.9 registry.rb, 1.13, 1.14

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/io
In directory pub.open-bio.org:/tmp/cvs-serv17319/lib/bio/io

Modified Files:
	brdb.rb das.rb ddbjxml.rb fastacmd.rb flatfile.rb higet.rb 
	keggapi.rb registry.rb 
Log Message:
* 'alias :foo :bar' is changed to 'alias foo bar'


Index: registry.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/registry.rb,v
retrieving revision 1.13
retrieving revision 1.14
diff -C2 -d -r1.13 -r1.14
*** registry.rb	8 Sep 2005 01:22:12 -0000	1.13
--- registry.rb	26 Sep 2005 13:00:08 -0000	1.14
***************
*** 68,72 ****
        return nil
      end
!     alias :db :get_database
  
      def query(dbname)
--- 68,72 ----
        return nil
      end
!     alias db get_database
  
      def query(dbname)
***************
*** 192,196 ****
    begin
      require 'pp'
!     alias :p :pp
    rescue
    end
--- 192,196 ----
    begin
      require 'pp'
!     alias p pp
    rescue
    end

Index: brdb.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/brdb.rb,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** brdb.rb	8 Sep 2005 01:22:11 -0000	1.3
--- brdb.rb	26 Sep 2005 13:00:08 -0000	1.4
***************
*** 72,76 ****
    begin
      require 'pp'
!     alias :p :pp
    rescue LoadError
    end
--- 72,76 ----
    begin
      require 'pp'
!     alias p pp
    rescue LoadError
    end

Index: flatfile.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/flatfile.rb,v
retrieving revision 1.36
retrieving revision 1.37
diff -C2 -d -r1.36 -r1.37
*** flatfile.rb	8 Sep 2005 01:22:11 -0000	1.36
--- flatfile.rb	26 Sep 2005 13:00:08 -0000	1.37
***************
*** 111,115 ****
        end
      end
!     alias :each :each_entry
  
      def rewind
--- 111,115 ----
        end
      end
!     alias each each_entry
  
      def rewind

Index: keggapi.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/keggapi.rb,v
retrieving revision 1.8
retrieving revision 1.9
diff -C2 -d -r1.8 -r1.9
*** keggapi.rb	7 Aug 2005 09:49:22 -0000	1.8
--- keggapi.rb	26 Sep 2005 13:00:08 -0000	1.9
***************
*** 193,197 ****
    begin
      require 'pp'
!     alias :p :pp
    rescue LoadError
    end
--- 193,197 ----
    begin
      require 'pp'
!     alias p pp
    rescue LoadError
    end

Index: fastacmd.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/fastacmd.rb,v
retrieving revision 1.7
retrieving revision 1.8
diff -C2 -d -r1.7 -r1.8
*** fastacmd.rb	16 Aug 2005 09:38:34 -0000	1.7
--- fastacmd.rb	26 Sep 2005 13:00:08 -0000	1.8
***************
*** 72,76 ****
      self
    end
!   alias :each :each_entry
  
  end
--- 72,76 ----
      self
    end
!   alias each each_entry
  
  end

Index: das.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/das.rb,v
retrieving revision 1.8
retrieving revision 1.9
diff -C2 -d -r1.8 -r1.9
*** das.rb	8 Sep 2005 01:22:11 -0000	1.8
--- das.rb	26 Sep 2005 13:00:08 -0000	1.9
***************
*** 396,400 ****
  # begin
  #   require 'pp'
! #   alias :p :pp
  # rescue LoadError
  # end
--- 396,400 ----
  # begin
  #   require 'pp'
! #   alias p pp
  # rescue LoadError
  # end

Index: ddbjxml.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/ddbjxml.rb,v
retrieving revision 1.5
retrieving revision 1.6
diff -C2 -d -r1.5 -r1.6
*** ddbjxml.rb	23 Jun 2004 14:35:26 -0000	1.5
--- ddbjxml.rb	26 Sep 2005 13:00:08 -0000	1.6
***************
*** 113,117 ****
    begin
      require 'pp'
!     alias :p :pp
    rescue LoadError
    end
--- 113,117 ----
    begin
      require 'pp'
!     alias p pp
    rescue LoadError
    end

Index: higet.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/higet.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** higet.rb	11 Jul 2005 09:30:46 -0000	1.1
--- higet.rb	26 Sep 2005 13:00:08 -0000	1.2
***************
*** 52,56 ****
    begin
      require 'pp'
!     alias :p :pp
    rescue LoadError
    end
--- 52,56 ----
    begin
      require 'pp'
!     alias p pp
    rescue LoadError
    end