[Biopython] superimposing problem

[George Devaniranjan]

sorry message got sent before I finished.

I can do this (connected.jpg)

I want to do this (superimpose.jpg)


Thanks
George

On Tue, Dec 7, 2010 at 4:14 PM, João Rodrigues <anaryin at gmail.com> wrote:

> Hello George,
>
> From what I understood, what you want to be compare the diversity of two
> loops based on anchor points.
>
> Peter already pointed you to a great resource here<http://www2.warwick.ac.uk/fac/sci/moac/students/peter_cock/python/protein_superposition/>
> .
>
> To make it clearer, you should first define the residues you want to align
> (or the particular atoms) and then perform the alignment.
>
> For example, I wanted to align a loop in my protein so I defined the *
> resi_range* variable to restrict the alignment to those residues.
> Furthermore, I then made sure that I only used CA atoms with two for loops.
>
> Check the code here (http://pastebin.com/V2UsGYGL), might help you
> understand how it works.
>
> Best!
>
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