[Bioperl-pipeline] Re: iohandlers

[Tania Oh]

oops. forgot to attach the xml stylesheet.

here it is:

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thanks!
tania

On 26 Jan 2004, at 19:17, Tania Oh wrote:

> Hi all,
>
>
> the last email I sent to the list was about a bug I had that inputs 
> were not being sent into genewise.
>
> after a long bug hunt, I've come to realise that the iohandler no 5 is 
> never called! ie. the Bio::DB::Fasta::get_seq_by_id function is never 
> called..
>
> is my xml declaration wrong?
>
> when the genewise runnable is called, the only datahandlers used are 
> no 4 which is to get_all_ProteinAlignFeatures. so iohandler no 5 is 
> not called.
>
> how do I get around this?
>
>
> any ideas would be much appreciated!
>
> thanks in advance,
> tania
>