[Bioperl-pipeline] iohandlers

[Tania Oh]

Hi all,


the last email I sent to the list was about a bug I had that inputs 
were not being sent into genewise.

after a long bug hunt, I've come to realise that the iohandler no 5 is 
never called! ie. the Bio::DB::Fasta::get_seq_by_id function is never 
called..

is my xml declaration wrong?

when the genewise runnable is called, the only datahandlers used are no 
4 which is to get_all_ProteinAlignFeatures. so iohandler no 5 is not 
called.

how do I get around this?


any ideas would be much appreciated!

thanks in advance,
tania