[Bioperl-pipeline] help needed : Genewise in pipeline not getting input

[Tania Oh]

Hi all,

am having some problems with getting biopipe to run genewise.

I get the error from genewise that there is no protein sequence entered 
and target dna.

Setup_genewise.pm seems to run okay with the input table getting filled 
up with the relevant datat.

but where is it in biopipe that the data from the input table is 
retrieved to be sent to genewise? the object that is sent to the 
genewise runnable doesn't contain the query_pep or the target_dna 
required by genewise.

attached is my xml stylesheet. Pls have a look and tell me if   I 
missed  out something?

thanks in advance,
tania


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