[Bioperl-pipeline] Re: altering the genomic_sequence_annotation.xml file

[Shawn Hoon]

Hi Andy,
	<db> refers to the logic name of your database like swissprot or nr etc
<db_file> is the actually path used to locate your database 
/data/swiss.fa
and is the one actually used by the blast analysis.


shawn

On Tuesday, March 11, 2003, at 01:31 AM, Andy Nunberg wrote:

> Hi,
> I am setting up the bioperl-pipeline here at Orion. Unfortunately I 
> dont
> have any experience with XML, but i understand the very very basics
> (tags etc).
>
> I want to alter the genomic_sequence_annotation.xml file since I have 
> set
> up an Ensembl db with two test contigs in it(not the ones in your 
> example).
> I noticed in the blast section there is the <db> tag and the <db_file> 
> tag
> what is the difference between the two?
>
> In the example i have downloaded the <db> tag changes for each 
> different
> blast, but the <db_file> stays the same.
>
>
> *******************************************************************
> Andy Nunberg, Ph.D
> Computational Biologist
> Orion Genomics, LLC
> (314) 615-6989
> http://www.oriongenomics.com
>