[Bioperl-pipeline] altering the genomic_sequence_annotation.xml file

[Andy Nunberg]

Hi,
I am setting up the bioperl-pipeline here at Orion. Unfortunately I dont
have any experience with XML, but i understand the very very basics
(tags etc).

I want to alter the genomic_sequence_annotation.xml file since I have set
up an Ensembl db with two test contigs in it(not the ones in your example).
I noticed in the blast section there is the <db> tag and the <db_file> tag
what is the difference between the two?

In the example i have downloaded the <db> tag changes for each different
blast, but the <db_file> stays the same.


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Andy Nunberg, Ph.D
Computational Biologist
Orion Genomics, LLC 
(314) 615-6989
http://www.oriongenomics.com