[Bioperl-pipeline] Fwd: Pipeline masters, help!

[Juguang Xiao]

Begin forwarded message:

> From: Luo Ming <luoming at tll.org.sg>
> Date: Tue Jun 3, 2003  7:03:35  PM Asia/Singapore
> To: bioinformatics at tll.org.sg
> Subject: Pipeline masters, help!
>
> I was trying to run a simple blast pipeline, encountered a "Bus 
> error", what is that?
>
> perl ~luoming/src/bioperl-pipeline/scripts/PipelineManager -dbname 
> luoming_test_pipe -xml 
> /R5_capricorn/luoming/test_pipe/blast_file_pipeline.xml -schema 
> ~luoming/src/bioperl-pipeline/sql/schema.sql -local
>
> Creating luoming_test_pipe
>    Loading Schema...
> Reading Data_setup xml   : blast_file_pipeline.xml
> Doing DBAdaptor and IOHandler setup
> Doing Pipeline Flow Setup
> Doing Analysis..
> Doing Rules
> Doing Job Setup...
> Loading of pipeline luoming_test_pipe completed
> 3 analysis found.
> Running test and setup..
>
> //////////// Analysis Test ////////////
> Checking Analysis 1 DataMonger
> -------------------- WARNING ---------------------
> MSG: Skipping test for DataMonger
> ---------------------------------------------------
>  ok
> Checking Analysis 2 Blast ok
> Checking Analysis 3 Blast ok
> Fetching Jobs...
> Fetched 1 incomplete jobs
> Running job /tmp//0/luoming_test_pipe_DataMonger.1054637610.690.out 
> /tmp//0/luoming_test_pipe_DataMonger.1054637610.690.err
> Bus error
>
>