[Bioperl-pipeline] Annotation example error

[shawnh@fugu-sg.org]

Ah dang. I committed code with debug includes. Sorry.

committed the fixed pipelinemanager. pls update.


> I have downloaded the latest cvs releases for the required packages and
> Bio/Cluster/Family.pm does not seem to exist.
> There is a Bio/Cluster/FamilyI.pm in bioperl-live.
> Also Bio/Seq/SeqBuilder.pm does not exist in the bioperl-live package
> downloaded via command line cvs, but does exist
> in the bioperl-live package downloaded as a tarball from the WebCVS site.
> So how do I ensure I have the correct releases of all the required packages?


Right now we are working as much off bioperl-live as possible. We hope to branch 
together for 1.2 at the end of the year then it should be compatible with that.
Bio::Cluster::Family doesn't exist as I changed the name to Bio::Cluster::SequenceFamily,
but I'm still working on TribeMCL so its not updated yet.
But in future, we will be more explicit about the compatibility issues of the pipelines especially
with bioperl and ensembl.

best,

shawn

> 
> Cheers,
> Sean
> 
> 
> 
> -----Original Message-----
> From: shawnh@fugu-sg.org [mailto:shawnh@fugu-sg.org]
> Sent: Tuesday, 22 October 2002 2:00 AM
> To: McWilliam, Sean (LI, Uni of Queensland)
> Cc: 'bioperl-pipeline@bioperl.org'
> Subject: RE: [Bioperl-pipeline] Annotation example error
> 
> 
> Hi Sean,
> 	I just found out what was the problem. The developer cvs
> and the public cvs are somehow not in sync. THe version of the xml
> which I committed doesn't seem to have found its way to the public cvs
> repository.
> weird. Will try and find out whats going on.
> in the mean time, I have put the xml up on the web for download.
> 
> http://www.biopipe.org/download/genomic_sequence_annotation.xml
> 
> but it may not work if the code was not updated as well.
> 
> cheers,
> 
> shawn
> 
> ********************************
> * Shawn Hoon
> * http://www.fugu-sg.org/~shawnh
> ********************************
> 

-- 
********************************
* Shawn Hoon
* http://www.fugu-sg.org/~shawnh
********************************