[Bioperl-pipeline] Annotation example error

[Elia Stupka]

> I tried removing the ensembl branch of bioperl-live from my path and
> got an error about not being able to locate Bio/Annotation.pm, the
> example code obviously needs this. 

Annotation has gone out of the window in the latest main trunk of
bioperl-live, that's why you had this problem...

...finally Ensembl has sorted out its new schema and branch, so we can now
work with bioperl-live only, which will make life a lot easier. Give us a
week or two and we should probably have examples,etc. working on the main
trunk of ensembl and bioperl and no more annoying problems like those
above....

> The biopipe website mentions that genscan will be implemented shortly,
> this is the next logical step for us also, so I was wondering how
> imminent is this, is it a matter of days, weeks, or months? 

Actually genscan, genewise, and a lot of protein analysis is already
implemented, we just haven't gotten around to providing a full blown
example yet, but you can run them in your pipeline, as we've been running
them for a while and they are all committed to bioperl-run.

Elia

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