[Bioperl-l] SFF format support

Peter biopython at maubp.freeserve.co.uk
Thu Nov 4 11:40:13 UTC 2010


2010/11/4 Miguel Pignatelli <miguel.pignatelli at uv.es>:
> Thanks Chris,
>
> I will get in touch again when I am able to hook a working module (I will
> check Biopython's Bio.Seq.SffIO)
>
> M;

Hi Miguel,

In case it helps, the Biopython SFF code is here - this includes embedded
documentation with test examples:

http://github.com/biopython/biopython/blob/master/Bio/SeqIO/SffIO.py

We also have some test SFF files here (see the README file for details):

http://github.com/biopython/biopython/tree/master/Tests/Roche/

Peter



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