[Bioperl-l] Full bioperl-live github demo

[Chris Fields]

This worked for me (note the URL is git, not http; on Mac OS X 10.6, git 1.6.4.1):

cjfields$ git clone git://github.com/bioperl/bioperl-test.git
Initialized empty Git repository in /Users/cjfields/gittest/bioperl-test/.git/
remote: Counting objects: 86737, done.
remote: Compressing objects: 100% (22309/22309), done.
remote: Total 86737 (delta 64759), reused 85957 (delta 63979)
Receiving objects: 100% (86737/86737), 143.24 MiB | 1536 KiB/s, done.
Resolving deltas: 100% (64759/64759), done.

For dev access (ssh or https) we need to set up collaborators within the github bioperl account.  I'll add a few.  Do you have a github acct set up?

chris

On May 3, 2010, at 7:25 AM, Mark A. Jensen wrote:

> Hi Chris,
> I attempted a clone and got the following. Is this my problem?
> thanks MAJ
> 
> $ git clone http://github.com/bioperl/bioperl-test.git
> 
> Initialized empty Git repository in /...../bioperl/github/bioperl-test/.git/
> Getting alternates list for http://github.com/bioperl/bioperl-test.git
> Getting pack list for http://github.com/bioperl/bioperl-test.git
> Getting index for pack 809561bb87edbf2bef183164ceb96cd6099ee06c
> Getting index for pack 9530b04c1b4f494c2c9163775fdc00eab975caa6
> Getting pack 809561bb87edbf2bef183164ceb96cd6099ee06c
> which contains 5ac325fa636b50ca1163d79feceb00eff1fa738f
> error: file /...../github/bioperl-test/.git/objects/pack/pack-809561bb87edbf2bef183164ceb96cd6099ee06c.pack is not a GIT packfile
> fatal: packfile /...../github/bioperl-test/.git/objects/pack/pack809561bb87edbf2bef183164ceb96cd6099ee06c.pack cannot be accessed
> 
> 
> ----- Original Message ----- From: "Chris Fields" <cjfields at illinois.edu>
> To: "BioPerl List" <bioperl-l at lists.open-bio.org>
> Sent: Monday, May 03, 2010 12:22 AM
> Subject: [Bioperl-l] Full bioperl-live github demo
> 
> 
>> All,
>> 
>> I have pushed a demo of the bioperl-live (all branches and tags) to github here:
>> 
>> http://github.com/bioperl/bioperl-test
>> 
>> This is separate from the 'bioperl-live' repo at the same github account for the time being.  The conversion was performed using svn2git (the gitorious C++/Qt version from the KDE project migration, Jonathan Leto's suggestion), using the rsync'ed svn repo via ssh from dev.open-bio.org, so an update and rerun can be performed very quickly.  The actual conversion of the entire bioperl repo took very little time, actually (less than 3 minutes).  I think, with some additional small work using the svn2git rules pretty much everything is ready for migration.
>> 
>> In this run, all subversion tags are converted to git tags (branches remain git branches as expected).  Just in case I'm missing something, I would like everyone to take a look at this, though.  In particular, I would like to make sure tags and branches are as they are expected.  So far I haven't seen anything that stands out as odd.
>> 
>> chris
>> 
>> 
>> 
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>> 
> 
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