[Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die

[David Messina]

On Sep 19, 2006, at 10:03 AM, Chris Fields wrote:
> Which modules were they?

Primarily some modules in the Bio/Ontology/ directory. Their NAME pod  
sections don't have their fully qualified name.

e.g.
OntologyEngineI - Interface a minimal Ontology implementation should  
satisfy

instead of

Bio::Ontology::OntologyEngineI - Interface a minimal Ontology  
implementation should satisfy

This produced the problem that Hilmar reported whereby these modules  
are listed (and indexed) incorrectly in the deobfuscator's browsable  
list, and clicking on them wouldn't show the lower table of methods.


Dave