[Bioperl-l] Attention: upcoming BioPerl 1.5 developer's release

[James Thompson]

Jason,

> Hey James - isn't this your module - you need to implement get_string()  
> in ProtMatrix.

You're right, and I'm working on it. :) I just finished the implementation a
while ago, and I'm re-running "make test" right now. Sorry about that, I should
have mentioned this in my e-mail this morning.

I'm just ironing out a few more methods in ProtMatrix.pm. Should be finished by
the end of today.

Quick question - would it be more useful to everyone if I set the BIOPERLDEBUG
variable before I ran "make test"? If so, let me know and I'll re-run it and 
e-mail results to the list.

James


 
> > t/Registry.t      255 65280     6    3  50.00%  5-6
> > t/RootStorable.t    2   512    34   56 164.71%  7-34
> > t/SeqIO.t           2   512   270  386 142.96%  78-270
> > t/SeqStats.t                   28    9  32.14%  10-12 21-24 26 28
> fixed, needed to round
> > t/SimpleAlign.t   255 65280    61   16  26.23%  54-61
> > t/splicedseq.t                  9    4  44.44%  3 5-6 9
> fixed
> > 111 subtests skipped.
> >
> > I have more detailed output if anyone wants it.
> >
> > Cheers,
> >
> > James
> >
> > On Thu, 30 Sep 2004, Aaron J. Mackey wrote:
> >
> >>
> >> With much-appreciated help from Steve Chervitz and Allen Day, there's
> >> about to be a real push towards a 1.5 developer's release; as such, I
> >> highly encourage all module authors/maintainers to get in those
> >> documentation updates and finish any functionalities you've only
> >> "stubbed" in place.  I'm not yet declaring a freeze, but don't be
> >> surprised if I do so soon ...
> >>
> >> I have a pretty good idea of the new things that have gone in since
> >> 1.4, but it wouldn't hurt you to drop me a private line about any
> >> significant new functionality, changed API or bug fixes you've done
> >> since the 1.4 releases.  You should also check the AUTHORS file and
> >> make sure your contact and attribution information is listed as you so
> >> desire.
> >>
> >> Now is also the time for you with "odd" systems (for me that means  
> >> Sun,
> >> SGI, and any Windows) to give the bioperl-live CVS checkout a full  
> >> make
> >> test, and to post your results (preferably only the stuff that didn't
> >> work).  If you can provide a patch, even better!
> >>
> >> I hope to have a release candidate available by the end of next week,
> >> with the real thing following very shortly thereafter (unless there  
> >> are
> >> show-stoppers, of course)
> >>
> >> Thanks,
> >>
> >> -Aaron
> >>
> >> --
> >> Aaron J. Mackey, Ph.D.
> >> Dept. of Biology, Goddard 212
> >> University of Pennsylvania       email:  amackey at pcbi.upenn.edu
> >> 415 S. University Avenue         office: 215-898-1205
> >> Philadelphia, PA  19104-6017     fax:    215-746-6697
> >>
> >> _______________________________________________
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> >> Bioperl-l at portal.open-bio.org
> >> http://portal.open-bio.org/mailman/listinfo/bioperl-l
> >>
> >
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> >
> --
> Jason Stajich
> jason.stajich at duke.edu
> http://www.duke.edu/~jes12/
> 
>