[Bioperl-l] New feature "Bond"

Lincoln Stein lstein at cshl.edu
Tue May 27 10:26:47 EDT 2003


Sounds like we need agent 007 to handle this one.

Lincoln

On Tuesday 27 May 2003 09:21 am, Jason Stajich wrote:
> There are report about this (#1043, #1371 at bugzilla.bioperl.org) - but
> apparently no one has gotten around to applying any fixes for it if you
> still see them.
>
> Perhaps someone will volunteer to fix this.  To do it properly so that we
> can actually write out a 'bond' operator will take some work to the
> Bioperl location object model because we currently don't handle the
> operator.  Aaron's fix posted in #1371 skips the feature all together -
> which is better than falling over, but of course loses that information.
>
>
> -jason
>
> On Tue, 27 May 2003, M K. Govind wrote:
> > Dear all
> >
> > I am finding a new feature called "bond" in a few genbank files.
> > And the program refuses to parse and returns an error "operator
> > bond" unrecognised by the parser
> >
> > HOw do i resolve this and parse this feature as well ?
> >
> > Thank you
> >
> > -Govind
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-- 
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Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein at cshl.org			                  Cold Spring Harbor, NY
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