Bioperl: Processing blast report of multiple input sequences

[Kris Boulez]

Is a Bio::Tools::Blast object supposed to be able to parse a blast
output file containing the output of blasting multiple sequences (i.e.
the input to blast (BLASTN 2.0.9) was a Fasta file containing multiple
sequences. When doing 

  my $blastobj = Bio::Tools::Blast->new( -file => "$in_file",
                                         -parse => 1,
                                         -signif => '1',
                                          );
          
  foreach my $hit ($blastobj->hits) {
                         [ do somehting with $hit ] 
  }

I only see the hits for the first sequence. Is this intentional and
should I split up the report my self for each input sequence ?

Kris,
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