Bioperl: Question: reading in blast results from scalar?

Aaron J Mackey ajm6q@virginia.edu
Tue, 15 Feb 2000 12:45:22 -0500 (EST)


Another option would be to use the IO::Scalar module to wrap the scalar as
a filehandle, and pass that along to the parser (not tested, but can't see
why that wouldn't work).

-Aaron

On Tue, 15 Feb 2000, David Block wrote:

> This may be a naive answer, but could you just print the scalar to a file
> (or STDOUT) and then pass it along (pipe it)?
> 
> -Dave
> 
> On Tue, 15 Feb 2000, Nathan O. Siemers wrote:
> 
> > 
> > Perhaps this is a general perl question.
> > 
> > 	How does one submit a blast output for parsing, etc, using
> > 	Blast.pm, when you have stored the blast result itself into a
> > 	scalar, rather than a file?
> > 
> > 	Thanks,
> > 
> > 	nathan
> > 
> > -- 
> > N a t h a n   O .  S i e m e r s
> > Bioinformatics
> > Division of Applied Genomics
> > Bristol-Myers Squibb Pharmaceutical Research Institute
> > Hopewell Building 3B, P.O. Box 5400, Princeton, NJ 08543-5400
> > 609 818-6568
> > siemersn@bms.com
> > 
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