[Biojava-dev] Contributing chromatogram support to BioJava

[Schreiber, Mark]

Hi -

The ABITraceRenderer is found at
org.biojava.bio.gui.sequence.AbiTraceRenderer. It follows the biojava
gui idea of a SequenceRenderer. Hopefully if the ChromatogramGraphic can
be worked into a SequenceRenderer somehow then AbiTraceRender can be
deprecated and replaced with something more generic.

- Mark


> -----Original Message-----
> From: Rhett Sutphin [mailto:rhett-sutphin at uiowa.edu] 
> Sent: Wednesday, 12 March 2003 1:37 p.m.
> To: Schreiber, Mark; biojava-dev at biojava.org
> Subject: Re: [Biojava-dev] Contributing chromatogram support 
> to BioJava
> 
> 
> Schreiber, Mark wrote:
> > Is there a plan to update the ABITraceViewer to work with the new 
> > Chromatogram API? It would be cool if it could work with 
> all supported 
> > Chromatograms.
> 
> I don't know what ABITraceViewer is, so I can't respond about it 
> specifically.  But the code I'm contributing includes a class called 
> ChromatogramGraphic that knows how to draw a Chromatogram onto a 
> Graphics2D object.
> 
> It is optimized (somewhat) to only draw the portion of the 
> Chroamtogram 
> that falls into the clipping rectangle of the graphics 
> context, so it is 
> suitable for use in interactive applications.
> 
> Rhett
> 
> 
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