[Open-bio-l] OBDA redux?

[Fields, Christopher J]

Just a quick update on this: the old OBDA specs were still in CVS in the obda-specs module (the old obda site had the module wrong).  I ran git cvsimport on that after I copied the CVS repo to my laptop, so it's now on github:

https://github.com/OBF/OBDA

We could probably work on updates from there.

chris

On Nov 18, 2011, at 7:45 AM, Fields, Christopher J wrote:

> On Nov 18, 2011, at 5:21 AM, Peter Cock wrote:
> 
>> On Fri, Nov 18, 2011 at 10:55 AM, Raoul Bonnal <bonnal at ingm.org> wrote:
>>> ...
>>> And which are the information you want to extract once you
>>> have your index ?
>>> 
>> 
>> Biopython and BioPerl have their SeqIO parsers hooked up
>> to indexing code. This means you can access a record via its
>> ID, and it is parsed for you on demand - just like if you'd
>> iterated over the file in order parsing the records one by one.
>> 
>> Biopython (not sure about BioPerl) can also just fetch the raw
>> text of that record.
> 
> Re: BioPerl, I'm not sure about the OBDA implementations, but I know the older Bio::Index modules allow this.  I would be surprised if the OBDA-specific code didn't, but adding this should be easy.
> 
> chris
> 
> 
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