[Open-bio-l] More FASTQ examples for cross project testing

Peter biopython at maubp.freeserve.co.uk
Wed Aug 26 10:06:39 UTC 2009


On Wed, Aug 26, 2009 at 3:56 AM, Michael Heuer<heuermh at acm.org> wrote:
> Peter wrote:
>
>> Hi all,
>>
>> I've been chatting with Peter Rice (EMBOSS) and Chris Fields (BioPerl)
>> off list about this plan. I'm going to co-ordinate putting together a
>> set of valid FASTQ files for shared testing (to supplement the
>> existing set of invalid FASTQ files already done and being used in
>> Biopython and BioPerl's unit tests - and hopefully with EMBOSS soon).
>> ...
>
> Very cool idea, Peter, and Peter, and Chris.  I don't believe anyone from
> biojava has spoken up on this thread yet, so I thought I should add that
> we are working towards a compatible implementation as well.
>
>   michael

Hi Michael - we asked the BioJava guys a while back, and at the time
there was interest but no volunteers. Who is working on this now?

Peter




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