[Open-bio-l] Re: [DAS] Info about BioXML

[Lincoln Stein]

Hi Paul,

Go for it!  You have my full support.

Lincoln

On Wednesday 25 September 2002 1:43 pm, Paul Gordon wrote:
> <!-- Thanks for the plug, James -->
>
> I've had 9000 hits to that page since June, so there seems to be a
> community need for this information. I try to keep this page current, and
> people do mail me updates on their work. This is also related directly to
> my research (in terms of interoperability of various formats, XSLT
> mapping, etc. covering a broad swath of application domains), so I'd being
> willing to resurrect bioxml.org in conjunction with Matthew.  There is a
> lot more kinds of information I'd like to add.
>
> I'm especially interested in setting up a standard URN namespace and
> repository for peoples various formats and any contributions
> people have for data transformation and presentation.  This is very much
> in the open-bio spirit, I think...
>
> ----------------------------------------------------
> Purgamentum init, exit purgamentum
>
> Paul Gordon
> Research Associate
> Faculty of Medicine
> University of Calgary
>
> On Tue, 24 Sep 2002, James Freeman wrote:
> > Hi Folks,
> >
> > A good start to this exists and is at:
> >
> > http://www.visualgenomics.ca/gordonp/xml/
> >
> > The I3C has its sights on either AGAVE or BSML, BSML is a valid output
> > in bioperl, so that is also a good start, at least a fast one.
> >
> > Warmest Regards,
> >
> > Jim
>
> <snip />
>
> > >>-----Original Message-----
> > >>From: Matthew Pocock [mailto:matthew_pocock@yahoo.co.uk]
> > >>Sent: Wednesday, 25 September 2002 12:16 a.m.
> > >>To: Wiepert, Mathieu
> > >>Cc: 'Suraj_Meiyur'; 'das@biodas.org'
> > >>Subject: Re: [DAS] Info about BioXML
> > >>
> > >>Hi,
> > >>
> > >>BioXML would be a good thing to resurrect. I would be happy to help
> > >>manage it. My vision would be to publish several (perhaps many) small
> > >>xml-schema deffinitions for common biological data types &
> > >>encoders/decoders for each project. This should help us avoid getting
> > >>bogged down in the eternal data-model for everything quagmire.
>
> <snip />
>
> > >>>>-----Original Message-----
> > >>>>From: Suraj_Meiyur [mailto:Suraj_Meiyur@satyam.com]
> > >>>>Sent: Monday, September 23, 2002 5:16 AM
> > >>>>To: 'das@biodas.org'
> > >>>>Subject: [DAS] Info about BioXML
> > >>>>
> > >>>>
> > >>>>Hi,
> > >>>>	I am a Bioinformatician and would like to know more
> > >>>>about bioxml.
> > >>>>The site www.bioxml.org doesn't seem to work. Does that mean
> > >>>>an end to the
> > >>>>initiative or a temporary hitch in services that are being
> > >>>>rendered by the
> > >>>>bioxml community.
> > >>>>
> > >>>>Regards,
> > >>>>Suraj
>
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