[Open-bio-l] GAME -> BioSQL?

Hilmar Lapp hlapp@gnf.org
Thu, 6 Jun 2002 21:11:27 -0700


The subject basically says it all. Does anyone have a GAME loader for BioSQL?

Bioperl has a GAME SeqIO parser (what about BioJava?). Supposedly, bioperl-db can load Bio::Seq objects into BioSQL (correct?). Is some of the information originally contained in the GAME input lost along the way? I.e., if I wanted to, could I round-trip GAME through BioSQL (assuming that Bioperl GAME SeqIO could write GAME which I think it can't)?

	-hilmar
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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