[Open-bio-l] Re: [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit

[Matthew Pocock]

+1 from me

Matthew

Steve Chervitz wrote:
> Brian,
> 
> Looks like the searchio/writer directory didn't make it back into scripts. Did
> you intend to leave these out? They're useful for showing how to work with the
> new SearchIO::Writer system, and will also be of use as Jason and I work on
> migrating functionality from the psiblast.pm to blast.pm SearchIO modules. Can
> you add them in again?
> 
> Also, the various blast output samples from examples/blast/out never got added
> back. Maybe this is an opportunity to do something novel... Wouldn't it be
> great  if all of the Bio* teams could share the same set of sample Blast (and
> other program) output files? This way, all the Bio* camps can profit from
> having a common, comprehensive set of sample files. This would help reduce
> duplicated effort across projects and may even foster some healthy competition
> (e.g., "the bioxxx blast parser can handle more sample files than the bioyyy
> blast parser").  
> 
> Actually, I've always envied Jeff's suite of Blast output files over in
> biopython/Tests/Blast but thought it would be silly to just copy them over into
> the bioperl cvs. The biojava folks have their own samples and I'd imagine the
> bioruby folks have been amassing their own collection as well.
> 
> What do people think about creating a new cvs module called "biodata" where we
> can start housing these things? Each Bio* release could include the latest
> export from biodata. This is one area that is truly cross-platform and
> cross-language.
> 
> Steve
> 
> --- Brian Osborne <bosborne@bioperl.org> wrote:
> 
>>bosborne
>>bioperl-live/examples/searchio/writer custom_writer.pl hitwriter.pl
>>hitwriter2.pl hitwriter3.pl hspwriter.pl rawwriter.pl resultwriter.pl
>>Mon Aug 26 07:45:19 EST 2002
>>Update of /home/repository/bioperl/bioperl-live/examples/searchio/writer
>>In directory pw600a.bioperl.org:/tmp/cvs-serv19317/examples/searchio/writer
>>
>>Removed Files:
>>	custom_writer.pl hitwriter.pl hitwriter2.pl hitwriter3.pl 
>>	hspwriter.pl rawwriter.pl resultwriter.pl 
>>Log Message:
>>Merging scripts and examples...
>>
>>_______________________________________________
>>Bioperl-guts-l mailing list
>>Bioperl-guts-l@bioperl.org
>>http://bioperl.org/mailman/listinfo/bioperl-guts-l
> 
> 
> 
> 
> =====
> Steve Chervitz
> sac@bioperl.org
> 
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