[MOBY-l] Problems starting dashboard in trunk

[Andreas Groscurth]

Hi Ola,

I hope a apple person can jump in here because I have no idea about 
apples and its JVM.... is it a JRE or a JDK ?

andreas

Ola Spjuth wrote:
> Hi Andreas,
>
> Sorry, I should have clarified this:
>
> I have apples JVM1.5.0 installed at 
> /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0 with the 
> following structure:
>
> Classes
> Commands
> Headers
> Home
>     bin
>     lib
> Libraries
> Resources
>
> The JRE container in Eclipse points to 
> /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home, and 
> setting is to not use deprecated JRE_LIB. I have set the JAVA_HOME in 
> Eclipse and in bash to this as well, so that should not be a problem 
> (don't know why that wasn't picked up by ant). Anyway, I can build 
> jmoby, moses datatypes, run sample clients, but not dashboard. I do 
> see commons-collections-2.1.jar under Maven dependencies in Eclipse.
>
> Cheers,
>
> /Ola
>
> On Mar 27, 2008, at 16:28 , Andreas Groscurth wrote:
>
>> Hi Ola,
>>
>> the current docs 
>> (http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Java/docs/EclipseAndJMoby.html) 
>> do not suggest to edit any build files... and the 'Home' makes me 
>> wondering - what Java installation is that ? never seen a Java 
>> installation that has a 'Home' directory inside ?!
>>
>> which Java version do you work with - is your JAVA_HOME set correctly 
>> and does Eclipse uses the correct JDK (and not some JRE) ?
>>
>> Best
>> andreas
>>
>> Ola Spjuth wrote:
>>> Hi,
>>>
>>> After following the docs for jMoby in eclipse (I had to add Home/ to 
>>> line line 108 in build.xml to look like <fileset 
>>> dir="${java.home}/../Home/lib">), and generating datatypes, I tried 
>>> to start dashboard and got the following exception:
>>>
>>> dashboard:
>>> [Dashboard] Exception in thread "main" 
>>> java.lang.NoClassDefFoundError: 
>>> org/apache/commons/collections/map/LinkedMap
>>> [Dashboard]     at 
>>> org.apache.commons.configuration.BaseConfiguration.<init>(BaseConfiguration.java:54) 
>>>
>>> [Dashboard]     at 
>>> org.apache.commons.configuration.CompositeConfiguration.clear(CompositeConfiguration.java:159) 
>>>
>>> [Dashboard]     at 
>>> org.apache.commons.configuration.CompositeConfiguration.<init>(CompositeConfiguration.java:56) 
>>>
>>> [Dashboard]     at 
>>> org.biomoby.service.dashboard.DashboardConfig.get(DashboardConfig.java:117) 
>>>
>>> [Dashboard]     at 
>>> org.biomoby.service.dashboard.DashboardConfig.getString(DashboardConfig.java:243) 
>>>
>>> [Dashboard]     at 
>>> org.biomoby.service.dashboard.Dashboard.getProperty(Dashboard.java:208)
>>> [Dashboard]     at 
>>> org.biomoby.service.dashboard.Dashboard.getComponent(Dashboard.java:485) 
>>>
>>> [Dashboard]     at 
>>> org.biomoby.service.dashboard.Dashboard.<init>(Dashboard.java:176)
>>> [Dashboard]     at 
>>> org.biomoby.service.dashboard.Dashboard.main(Dashboard.java:988)
>>>
>>> I am new to maven and don't really now how I should fix this 
>>> dependency.
>>> Any suggestions for a solution?
>>>
>>> Cheers,
>>>
>>> /Ola
>>> _______________________________________________
>>> moby-l mailing list
>>> moby-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/moby-l
>>
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