[MOBY-l] visualise data types

[maliha aziz]

Hi

While running the following command 

build/run/run-graphs-client -cachedir myCache -q -s > services.dot

(where myCache is some address of my own cache that i have updated through the dashboard before running this routine)

I get the following error ....

Exception in thread "main" java.lang.OutOfMemoryError: Java heap space
        at java.util.Arrays.copyOf(Unknown Source)
        at java.lang.AbstractStringBuilder.expandCapacity(Unknown Source)
        at java.lang.AbstractStringBuilder.append(Unknown Source)
        at java.lang.StringBuffer.append(Unknown Source)
        at org.biomoby.client.Graphviz.createBodyServicesGraph(Graphviz.java:186
)
        at org.biomoby.client.Graphviz.createServicesGraph(Graphviz.java:86)
        at MobyGraphs.main(MobyGraphs.java:386)


errrr??? wud really appreciate sum help wid this

Regards

Maliha

Martin Senger <martin.senger at gmail.com> wrote: 
Is there a tool that anyone knows of by which I could dump in all the biomoby datatypes and it returns me a tree type of structure (actual visual tree) 
Yes, it is. But it has not been updated for a long time. I have just tried and it still work (at least most of the options) - but it can produce too big pictures (for example with the option -d you get *all* data types). I was planning to make it better browsable. But it has now a low priority - but perhaps one day I will return to it by exploring Google maps API for it... 

Anyway, here is how you can use it (of course, you can also read about it quite comprehensive documentation on the jMoby pages):

cd jMoby
build/run/run-graphs-client -h | less
build/run/run-graphs-client -cachedir myCache -q -d >  data.dot
dot -Tpng data.dot > data.png
display data.png

[You need to fill first your local cache. You can use the one created by dashboard, or update it by another command-line client.

And you need program 'dot' that can convert the created tree into an image.] 

Cheers,
Martin




-- 
Martin Senger
   email: martin.senger at gmail.com
   skype: martinsenger 

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