[MOBY-l] Local BioMOBY Central - Ontology test fails

[Rajasekar Karthik]

Hi Mark,

I do have all the environment variables as suggested. Still, the same
results. :-(
I tested against the default http://mobycentral.icapture.ubc.ca/cgi-bin/On
tologyServer.cgi and 4 testcases fail:

ok 1 - use MOBY::Client::OntologyServer;
ok 2 - MOBY::Client::OntologyServer->can(...)
ok 3
ok 4
ok 5
ok 6
ok 7
not ok 8 # TODO How come I cant' set proxy back to its original value?
#   Failed (TODO) test at t/Client-OntologyServer.t line 101.
#          got: 'bar'
#     expected: undef
# Couldn't return proxy to previous value
not ok 9
#   Failed test at t/Client-OntologyServer.t line 111.
#          got: '0'
#     expected: '1'
# Namespace 'Rub1' reported erroneously as non-existent.
not ok 10
#   Failed test at t/Client-OntologyServer.t line 111.
#          got: '0'
#     expected: '1'
# Namespace 'Rub2' reported erroneously as non-existent.
ok 11
ok 12
ok 13
ok 14
ok 15
not ok 16
#   Failed test at t/Client-OntologyServer.t line 127.
#          got: '0'
#     expected: '1'
# Service type 'Rub1' reported erroneously as non-existent.
not ok 17
#   Failed test at t/Client-OntologyServer.t line 127.
#          got: '0'
#     expected: '1'
# Service type 'Rub2' reported erroneously as non-existent.
ok 18 - MOBY::Client::OntologyServer->can('relationshipExists')
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
1..27
# Looks like you failed 4 tests of 27.


On 2/11/07, Mark Wilkinson <markw at illuminae.com> wrote:
>
> Hi Karthik,
>
> Make sure that you have all three environment variables set:
>
> MOBY_SERVER=http://localhost/path/to/MOBY-Central.pl
> MOBY_URI=http://localhost/MOBY/Central
> MOBY_ONTOLOGYSERVER=http://localhost/path/to/OntologyServer.cgi
>
> That should solve your problems... I hope :-)
>
> M
>
>
>
>
> On Sun, 11 Feb 2007 14:18:25 -0800, Rajasekar Karthik
> <karthik085 at gmail.com> wrote:
>
> > Hi,
> >
> > I am setting up a local biomoby central. I am following this document:
> >
> http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Docs/MOBY-S_API/InstallingLocalMOBYCentral.html
> >
> > 1. When I do, make test - all test cases passes for all the files,
> except
> > for Client-OntologyServer.t. I attached my test results for all('make
> > test')
> > and for Client-OntologyServer.t('perl t/Client-OntologyServer.t') along
> > this
> > mail. Here is just the summary:
> >
> > Failed Test               Stat Wstat Total Fail  List of Failed
> >
> -------------------------------------------------------------------------------
> > t/Client-OntologyServer.t   13  3328    27   13  9-17 19-22
> > 1 test skipped.
> > Failed 1/13 test scripts. 13/381 subtests failed.
> > Files=13, Tests=381, 79 wallclock secs ( 7.82 cusr +  0.70 csys =  8.52
> > CPU)
> > Failed 1/13 test programs. 13/381 subtests failed.
> > make: *** [test_dynamic] Error 255
> >
> >
> > 2. t/Config file is being skipped for testing. It says:
> > all skipped: Required only when you have your own local MOBY Central
> > How do I test t/Config?
> >
> > Any help would be appreciated.
> >
>
>
>
> --
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>



-- 
Best Regards,
Rajasekar Karthik
karthik085 at gmail.com