[MOBY-l] java error

Nicholas Sutanto nsutanto at purdue.edu
Tue Feb 28 13:57:41 UTC 2006


Here you go:

Here is the contents of the lib folder:
alhagib 16 % ls -al
total 33716
drwxr-x---   3 nsutanto nsutanto    1536 Feb 21 17:38 .
drwxr-x---   9 nsutanto nsutanto     512 Feb 21 17:38 ..
-rw-r-----   1 nsutanto nsutanto      38 Sep 24  2003 .cvsignore.template
-rw-r-----   1 nsutanto nsutanto    1319 Jul 19  2005 README
-rw-r-----   1 nsutanto nsutanto   54665 Sep  4 08:15 activation.jar
-rw-r-----   1 nsutanto nsutanto  806310 Jun 10  2005 adenine.jar
-rw-r-----   1 nsutanto nsutanto   78933 Feb 12 11:40 alltools2.jar
drwxr-x---   3 nsutanto nsutanto     512 Dec 31  1969 ant_home
-rw-r-----   1 nsutanto nsutanto   33506 Sep  4 08:15 axis-ant.jar
-rw-r-----   1 nsutanto nsutanto 1604162 Sep  4 08:15 axis.jar
-rw-r-----   1 nsutanto nsutanto   71442 Sep  4 08:15 
commons-discovery-0.2.jar
-rw-r-----   1 nsutanto nsutanto  277722 Sep  4 08:15 
commons-httpclient-3.0-rc2.jar
-rw-r-----   1 nsutanto nsutanto   45550 Nov 17 08:04 commons-io-1.0.jar
-rw-r-----   1 nsutanto nsutanto  207723 Feb  2 04:35 commons-lang-2.1.jar
-rw-r-----   1 nsutanto nsutanto   38015 Sep  4 08:15 
commons-logging-1.0.4.jar
-rw-r-----   1 nsutanto nsutanto  140837 Jun 10  2005 concurrent.jar
-rw-r-----   1 nsutanto nsutanto   80090 Nov  7 19:01 fetaEngine.jar
-rw-r-----   1 nsutanto nsutanto 2497198 Jun 10  2005 icu4j.jar
-rw-r-----   1 nsutanto nsutanto   84366 Jun 10  2005 jakarta-oro-2.0.5.jar
-rw-r-----   1 nsutanto nsutanto  172053 Jun 10  2005 jaxen-core.jar
-rw-r-----   1 nsutanto nsutanto    7459 Jun 10  2005 jaxen-jdom.jar
-rw-r-----   1 nsutanto nsutanto   32071 Sep  4 08:15 jaxrpc.jar
-rw-r-----   1 nsutanto nsutanto  112356 Feb  5 06:25 jcalendar.jar
-rw-r-----   1 nsutanto nsutanto  153253 Aug 24  2005 jdom.jar
-rw-r-----   1 nsutanto nsutanto 2625127 Jun 10  2005 jena.jar
-rw-r-----   1 nsutanto nsutanto  128823 Jun 10  2005 junit.jar
-rw-r-----   1 nsutanto nsutanto  358085 Oct 12 06:09 log4j-1.2.12.jar
-rw-r-----   1 nsutanto nsutanto  311284 Jun 10  2005 lsid-client-1.1.2.jar
-rw-r-----   1 nsutanto nsutanto   98629 Jun 10  2005 lsid-server-1.1.2.jar
-rw-r-----   1 nsutanto nsutanto  280984 Jun 10  2005 mail.jar
-rw-r-----   1 nsutanto nsutanto  174777 Sep  4 08:15 mailapi_1_3_1.jar
-rw-r-----   1 nsutanto nsutanto  397032 Jun 10  2005 
mysql-connector-java-3.1.7-bin.jar
-rw-r-----   1 nsutanto nsutanto  224823 Jun 10  2005 rdf-api-2001-01-19.jar
-rw-r-----   1 nsutanto nsutanto   19427 Sep  4 08:15 saaj.jar
-rw-r-----   1 nsutanto nsutanto   25828 Jun 10  2005 saxpath.jar
-rw-r-----   1 nsutanto nsutanto   79265 Sep  4 08:15 servlet.jar
-rw-r-----   1 nsutanto nsutanto 1276781 Jun 10  2005 taverna.jar
-rw-r-----   1 nsutanto nsutanto  126771 Sep  4 08:15 wsdl4j-1.5.1.jar
-rw-r-----   1 nsutanto nsutanto 2952605 Jun 10  2005 xalan.jar
-rw-r-----   1 nsutanto nsutanto 1010806 Sep  4 08:15 xercesImpl.jar
-rw-r-----   1 nsutanto nsutanto  115666 Jun 10  2005 xercesSamples.jar
-rw-r-----   1 nsutanto nsutanto  108484 Jun 10  2005 xml-apis.jar
-rw-r-----   1 nsutanto nsutanto  124724 Sep  4 08:15 xmlParserAPIs.jar


Below are the error message that I got:

BUILD SUCCESSFUL
Total time: 5 seconds
Buildfile: build.xml

init:

config:

compile-normal:
    [javac] Compiling 227 source files to 
/.ulphius/p29/www-cgi/cgi-bin/nsutanto/moby/moby-live/Java/build/classes
    [javac] 
/.ulphius/p29/www-cgi/cgi-bin/nsutanto/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool/MobyXML.java:34: 
cannot find symbol
    [javac] symbol  : class Registration
    [javac] location: class 
org.biomoby.client.ui.graphical.applets.objectCreationTool.MobyXML
    [javac]     private Registration registration;
    [javac]                 ^
    [javac] 
/.ulphius/p29/www-cgi/cgi-bin/nsutanto/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool/MobyXML.java:363: 
cannot find symbol
    [javac] symbol  : class Registration
    [javac] location: class 
org.biomoby.client.ui.graphical.applets.objectCreationTool.MobyXML
    [javac]     public Registration getRegistration() {
    [javac]                ^
    [javac] 
/.ulphius/p29/www-cgi/cgi-bin/nsutanto/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool/MobyXML.java:59: 
cannot find symbol
    [javac] symbol  : class Registration
    [javac] location: class 
org.biomoby.client.ui.graphical.applets.objectCreationTool.MobyXML
    [javac]             registration = new Registration("MyObject", proto);
    [javac]                                    ^
    [javac] 
/.ulphius/p29/www-cgi/cgi-bin/nsutanto/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool/MobyXML.java:99: 
cannot find symbol
    [javac] symbol  : variable MobyUtilities
    [javac] location: class 
org.biomoby.client.ui.graphical.applets.objectCreationTool.MobyXML
    [javac]                             LinkedList linkedlist = 
MobyUtilities.GetRelations(whatIam);
    [javac]                                                         ^
    [javac] 
/.ulphius/p29/www-cgi/cgi-bin/nsutanto/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool/MobyXML.java:147: 
cannot find symbol
    [javac] symbol  : variable MobyUtilities
    [javac] location: class 
org.biomoby.client.ui.graphical.applets.objectCreationTool.MobyXML
    [javac]                     LinkedList ll = 
MobyUtilities.GetRelations(whatIhave);
    [javac]                                         ^
    [javac] 
/.ulphius/p29/www-cgi/cgi-bin/nsutanto/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool/MobyXML.java:160: 
cannot find symbol
    [javac] symbol  : variable MobyUtilities
    [javac] location: class 
org.biomoby.client.ui.graphical.applets.objectCreationTool.MobyXML
    [javac]                                     Pair p = 
MobyUtilities.ParseRelation(s);
    [javac]                                                  ^
    [javac] 
/.ulphius/p29/www-cgi/cgi-bin/nsutanto/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool/MobyXML.java:180: 
cannot find symbol
    [javac] symbol  : variable MobyUtilities
    [javac] location: class 
org.biomoby.client.ui.graphical.applets.objectCreationTool.MobyXML
    [javac]                                     Pair p = 
MobyUtilities.ParseRelation(s);
    [javac]                                                  ^
    [javac] 
/.ulphius/p29/www-cgi/cgi-bin/nsutanto/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool/MobyXML.java:216: 
cannot find symbol
    [javac] symbol  : variable MobyUtilities
    [javac] location: class 
org.biomoby.client.ui.graphical.applets.objectCreationTool.MobyXML
    [javac]                     myParent = 
(MobyUtilities.ParseRelation(myParent)).getAttribute();
    [javac]                                     ^
    [javac] 
/.ulphius/p29/www-cgi/cgi-bin/nsutanto/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool/MobyXML.java:218: 
cannot find symbol
    [javac] symbol  : variable MobyUtilities
    [javac] location: class 
org.biomoby.client.ui.graphical.applets.objectCreationTool.MobyXML
    [javac]             LinkedList temp = 
MobyUtilities.GetRelations(myParent);
    [javac]                                   ^
    [javac] Note: * uses or overrides a deprecated API.
    [javac] Note: Recompile with -Xlint:deprecation for details.
    [javac] Note: Some input files use unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.
    [javac] 9 errors

BUILD FAILED
/.ulphius/p29/www-cgi/cgi-bin/nsutanto/moby/moby-live/Java/build.xml:252: 
Compile failed; see the compiler error output for details.

Total time: 14 seconds


Martin Senger wrote:
>> But I still found the problem.
>> ... 
>> java version "1.5.0_04"
>>
>>     
>    Well, the next thing I can think of is to give me a list of the
> contents of your 'lib' directory (made by 'ls -l' so it contains also file
> sizes). I will look at it and compare with my version. Could you give me
> again the error messages please (I have removed your previous email with
> them)?
>
>    Martin
>
>   



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