[moby] [MOBY-l] test

[mark wilkinson]

Use "make test" instead - it is up to date and far far far more comprehensive.

M


-----Original Message-----
From: Silvia Scaglione <silvia77 at dist.unige.it>
Date: Wed, 31 Aug 2005 15:32:20 
To:moby-l at biomoby.org
Subject: Re: [moby] [MOBY-l] test

I have used the newer releases suggested below, but new errors appears 
after testing testMOBYClientCentral_v05.pl script on the mobycentral:
...
test 19         [PASS]
test 20         [FAIL] malformed payload invalid character string for 
serviceName.  Must start with a letter followed by [A-Za-z0-9_]
test 21         [FAIL]  Expected to find service; didn't find service
test 22         [FAIL] Expected to find service; didn't find service
test 23         [PASS]
test 24         [PASS]
Use of uninitialized value in print at testMOBYClientCentral_v05.pl line 250.
test 25         [FAIL]  WSDL was not retrieved
test 26         [FAIL] The service specified by authority=www.illuminae.com 
servicename=myfirstservice2 does not exist in the registry
test 27         [PASS]
...

Moreover, when I tried the testMOBYClientCentral_v05.pl script on my 
mobycentral, the error message changes a little bit:
>[www at ml370 scripts]$ perl testMOBYClientCentral_v05.pl
>TESTING MOBY CLIENT with
>         URL:  http://ml370.biotech.ist.unige.it/cgi-bin/MOBY-Central.pl
>         URI: http://ml370.biotech.ist.unige.it/MOBY/Central
>         Proxy: No Proxy Server
>
>test 1a         [PASS]
>test 1b         [PASS]
>test 1          [FAIL] Relationship Type hasa does not exist in the 
>biomoby.org Relationship Type system
>
>test 2          [PASS]
>test 3          [FAIL] Relationship Type hasa does not exist in the 
>biomoby.org Relationship Type system
>test 4          [FAIL] Relationship type ISA does not exist in the 
>relationship ontology
>test 5          [PASS]
>test 6          [FAIL] Object type $term cannot be resolved to an LSID
>test 7          [PASS]
>test 8          [FAIL] Object type $term cannot be resolved to an LSID
>test 9          [FAIL] Service Type HypotheticalService1 does not exist in 
>the ontology
>test 10         [PASS]
>test 11         [PASS]
>test 12         [PASS]
>test 13         [PASS]
>test 14         [FAIL] Relationship Type isa does not exist in the 
>biomoby.org Relationship Type system
>test 15         [FAIL] Relationship Type isa does not exist in the 
>biomoby.org Relationship Type system
>test 16         [PASS]
>test 17         [PASS]
>test 18         [PASS]
>test 19         [PASS]
>test 20         [PASS]
>500 Internal Server Error
>  ERROR ERROR ERROR

...any suggestions?



At 18.27 25/08/2005, Mark Wilkinson wrote:
>Can you first confirm where you got your mobycentral code from?  Is it
>one of the newer releases?  I'm certain that the latest release is
>functional (though there are a few small bugs in it that are now fixed
>in the CVS, but the CVS code isn't supported yet...)
>
>make/make install this code and see if it solves your problems.  You
>probably wont need to modify any of your configuration after this
>installation.
>
>http://biomoby.org/releases/biomoby.0.8.2a.tar.gz
>
>
>M
>
>
>
>On Thu, 2005-08-25 at 12:12 +0200, scaglione wrote:
> > hello,
> > I have followed instructions to install a moby central in my machine.I 
> have
> > tried the testMOBYClientCentral_v05.pl script on my mobycentral and an 
> error
> > appeared:
> >
> > >perl testMOBYCentral_v05.pl
> >
> > Useless use of hash element in void context
> > at /usr/lib/perl5/site_perl/5.8.5/RDF/Core/Serializer.pm line 52.
> > Global symbol "$sth_collection_ins" requires explicit package name
> > at /usr/lib/perl5/site_perl/5.8.5/MOBY/Central.pm line 3426.
> > Compilation failed in require at testMOBYCentral_v05.pl line 4.
> > BEGIN failed--compilation aborted at testMOBYCentral_v05.pl line 4.
> >
> > what does it mean?
> > The overall configuration of the moby central seemed to be ok, since 
> the test
> > of the same script on the main mobycentral works...
> > many thanks
> > silvia
> >
> >
> >
>--
>"Ontologists do it with the edges!"
>
>Mark Wilkinson
>Asst. Professor
>Dept. of Medical Genetics
>University of British Columbia
>PI in Bioinformatics
>iCAPTURE Centre
>St. Paul's Hospital
>Rm. 166, 1081 Burrard St.
>Vancouver, BC, V6Z 1Y6
>tel: 604 682 2344 x62129
>fax: 604 806 9274

PhD. Silvia Scaglione
Universita`degli Studi di Genova
Facolta' di Ingegneria, D.I.S.T. BioLab
Viale Causa, 13
16145 GENOVA - Italy
Tel Bio-lab +39 010 353 2789
Tel Centro Biotecnologie Avanzate   +39 010 5737 505
Fax +39 010 353 2948
E-mail silvia77 at dist.unige.it
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--
Mark Wilkinson
...on the road!