[moby] [MOBY-l] MobyDataSetInstance vs MobyDataSimpleinstance

[Mark Wilkinson]

Nope.  Searches for Collections of Objects will only find things that
consume Collections of Objects.  Searches for Collections of
DNASequences will find things that consume Collections of Objects
(complex search finding simple interface); however the reverse (simple
search finding complex interface) will not happen.

M

 
On Thu, 2005-04-14 at 21:36, Benjamin Good wrote:
> There is no .setXmlMode in MobyDataSetInstance .  I think this will 
> cause problems requesting services from Central ..??
> 
> Has anyone built a collection in a java and used it to query for 
> services successfully?
> 
> I built a collection of Objects as below and didn't find any matching 
> services?  This should match anything that accepts a collection as 
> input because of the inheritance from object right??
> 
>             //specify a dataype for use in the input to the template 
> service
>             MobyDataType type = new MobyDataType("Object");
> //make a jMoby object to act as the input to the template (and later 
> the actual call)
>             MobyDataSimpleInstance input1 = new MobyDataSimpleInstance 
> ("");
>             input1.setDataType (type);
>             input1.addNamespace (new MobyNamespace ("NCBI_gi"));
>             input1.setId("111076");
> 
>             MobyDataSimpleInstance input2 = new MobyDataSimpleInstance 
> ("");
>             input2.setDataType (type);
>             input2.addNamespace (new MobyNamespace ("NCBI_gi"));
>             input2.setId("111077");
> 
>             MobyDataSimpleInstance[] inputset = new 
> MobyDataSimpleInstance[2];
>             inputset[0] = input1;
>             inputset[1] = input2;
>             MobyDataSetInstance input = new 
> MobyDataSetInstance("",inputset);
> 
> //specify that the xml generated for this object by the getXML method
> //is suitable for communicating with moby central --- doesn't exist!
>          //   input.setXmlMode(MobyDataSimpleInstance.CENTRAL_XML_MODE);
> //add the moby object as input to the template service
>             templateService.addInput(input);
> 
> //Find services that match this template service
>             MobyService[] validServices = 
> worker.findService(templateService);
> 
> -> finds none
> -> why?
> 
> thanks!
> -Ben
> 
> 
> http://bioinfo.icapture.ubc.ca/bgood
> 
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-- 
Mark Wilkinson
Assistant Professor (Bioinformatics)
Dept. Medical Genetics, UBC, Canada