[MOBY-l] revised service output...need some explanations though...

[Paul Gordon]

I realize I'm getting in on this conversation late, but am I not reading 
the spec right?  Shouldn't each Scored_string be wrapped in a Simple tag?

>
> <?xml version='1.0' encoding='UTF-8'?>
> <moby:MOBY xmlns:moby='http://www.biomoby.org/moby' 
> xmlns='http://www.biomoby.org/moby'>
>     <moby:Response moby:authority='not_provided'>
>         <Collection>
>             <Scored_string namespace="" id="">
>                     <String namespace="" id="" 
> articleName="acronym">MAPK</String>
>                     <Object namespace="Global_keyword" 
> id="mitogen-activated protein kinase" articleName="string_component"/>
>                     <Long namespace="" id="" 
> articleName="score">0.90884572798250385</Long>
>             </Scored_string>
>             <Scored_string namespace="" id="">
>                     <String namespace="" id="" articleName="acronym"/>
>                     <Object namespace="Global_keyword" id="MAPK" 
> articleName="string_component"/>
>                     <Long namespace="" id="" articleName="score">1</Long>
>             </Scored_string>
>             <Scored_string namespace="" id="">
>                     <String namespace="" id="" articleName="acronym"/>
>                     <Object namespace="Global_keyword" 
> id="mitogen-activated protein kinase" articleName="string_component"/>
>                     <Long namespace="" id="" articleName="score">1</Long>
>             </Scored_string>
>             <Scored_string namespace="" id="">
>                     <String namespace="" id="" articleName="acronym"/>
>                     <Object namespace="Global_keyword" id="increase" 
> articleName="string_component"/>
>                     <Long namespace="" id="" 
> articleName="score">0.06212914418525689</Long>
>             </Scored_string>
>             <Scored_string namespace="" id="">
>                     <String namespace="" id="" articleName="acronym"/>
>                     <Object namespace="Global_keyword" id="We" 
> articleName="string_component"/>
>                     <Long namespace="" id="" 
> articleName="score">1.0000000000000237e-300</Long>
>             </Scored_string>
>         </Collection>
>     </moby:Response>
> </moby:MOBY>
>
> I like Mark's idea of using a collection for this, rather than 
> formatted text. I think something like MedLine abstracts are more fit 
> for the formatted text option. I am trying to figure out a few things 
> still. What do I need to put in for the Scored_string namespace 
> attribute?
>
> <Scored_string  namespace="$inputNS" id="$inputID">
>
> Does that mean the user will be sending a namespace and I just pass 
> that through? And if there is none then I leave it blank? Same 
> questions with the id attribute.
>
> My second question is about the Global_keyword. One of the problems I 
> see is that the returned scored text isn't always just one word, like 
> 'MAPK' or 'increase', but will spell out an acronym and return that, 
> as in 'mitogen-activated protein kinase'. From what I know, 
> Global_keyword is designed to be only ONE word, so is there something 
> else like Global_text or do I have to make that or what?
>
> My third question is with this new Scored_string thing. Is it an 
> object? I'm a little confused about that, but I think once I know what 
> it is I can figure out how to register it. Do I have to do anything 
> different because it is part of a collection or no?
>
> THANKS everyone!
>
> -Michael Jensen
> mdjgf8 at mizzou.edu
>
> (Mark, my email box was full I think so your email kept bouncing back. 
> It is empty now. :)
>
>
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