[MOBY-l] RE: Java call to MOBY fails

[Dave Waddell]

I noticed if I replace it with NCBI_gi and id=3094791 everything works fine.
Dave.

-----Original Message-----
From: Dave Waddell [mailto:dwaddell at nutecsciences.com] 
Sent: Tuesday, February 17, 2004 9:05 AM
To: ' (moby-l at biomoby.org)'
Subject: Java call to MOBY fails

I'm trying to make a call to MOBY to retrieve a Genbank Flat File record
using:

	    String NCBI_Acc = "AA936757";
	    String XMLInput = "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"
+
	    					"<moby:MOBY
xmlns:moby=\"http://www.biomoby.org/moby\">\n" +
	    					"<moby:Query>\n" +
        					"<moby:queryInput>\n" +
             				"<Simple articleName=''>\n" +
	    					"<Object
namespace=\"urn:lsid:biomoby.org:namespacetype:NCBI_Acc\" id=\"" + NCBI_Acc
+ "\"/>\n" +
             				"</Simple>\n" +
        					"</moby:queryInput>\n" +
	    					"</moby:Query>\n" +
	    					"</moby:MOBY>\n"; 
	    CentralImpl newCall = new
CentralImpl("http://mobycentral.cbr.nrc.ca/cgi-bin/Services/Services.cgi",
"http://biomoby.org/");
	    result = newCall.call("MOBYSHoundGetGenBankff", XMLInput);

but all I get back in "result" is:
<?xml version='1.0' encoding='UTF-8'?>
      <moby:MOBY xmlns:moby='http://www.biomoby.org/moby'
xmlns='http://www.biomoby.org/moby'>
        <moby:Response moby:authority='illuminae.com'>
        
        <moby:queryResponse moby:queryID=''/>
	
        </moby:Response>
      </moby:MOBY>

I have also tried feeding the namespace from:
String[] inputs = new String[]{"NCBI_gi", "NCBI_Acc"};
	    MobyService[] serviceInstance = worker.findService(inputs);
	    for (int j=0; i<serviceInstance.length; i++)
	    {	
	    	System.out.println("NCBI Service # " + i + "= " +
serviceInstance[i].toString());
	    }
	    "<Object namespace=\"" + inputs[0] + "\" id=\"" + NCBI_Acc +
"\"/>\n"

also:
	    					"<Object
namespace=\"urn:lsid:biomoby.org:namespacetype:NCBI_Acc:" + NCBI_Acc +
"\"/>\n" 

Which all give the same result. Any suggestions are appreciated.
Thanks, Dave.