[MOBY-guts] biomoby commit

[Paul Gordon]

gordonp
Sat Apr 10 22:20:46 EDT 2010
Update of /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/resources
In directory dev.open-bio.org:/tmp/cvs-serv20043/src/main/ca/ucalgary/seahawk/resources

Modified Files:
	mobyBuilderRules.xml 
Log Message:
Added LINUCS carbohydrate sequence recognition, for fun
moby-live/Java/src/main/ca/ucalgary/seahawk/resources mobyBuilderRules.xml,1.10,1.11
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/resources/mobyBuilderRules.xml,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -r1.10 -r1.11
--- /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/resources/mobyBuilderRules.xml	2010/03/17 20:21:55	1.10
+++ /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/resources/mobyBuilderRules.xml	2010/04/11 02:20:46	1.11
@@ -66,6 +66,16 @@
   <member value="Length" whitespace="strip">string-length('$1')</member>
 </object>
 
+<!-- \M is IUPAC monosaccharide residue shorthand -->
+<object>
+  <regex>\[\]\[\\S+\]\{.*?(?:([ab]-D-)?\M.?[\x20\(\)\[\]\-\+0-9\{\}]+){3,}</regex>
+  <datatype value="LINUCS"/>
+  <namespace>
+    <ns value="unknown">''</ns>
+  </namespace>
+  <member value="sequence" whitespace="strip">$0</member>
+</object>
+
 <!-- ABI sequence trace's magic signature at start of file -->
 <object>
   <regex>\AABIF.*\z</regex>