[MOBY-guts] biomoby commit

[Paul Gordon]

gordonp
Wed Oct 29 22:33:24 EDT 2008
Update of /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/resources
In directory dev.open-bio.org:/tmp/cvs-serv10500/src/main/ca/ucalgary/seahawk/resources

Modified Files:
	mobyBuilderRules.xml 
Log Message:
Updates related to SAWSDL wrapping Web Service implementation
moby-live/Java/src/main/ca/ucalgary/seahawk/resources mobyBuilderRules.xml,1.7,1.8
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/resources/mobyBuilderRules.xml,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -r1.7 -r1.8
--- /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/resources/mobyBuilderRules.xml	2008/01/30 00:04:06	1.7
+++ /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/resources/mobyBuilderRules.xml	2008/10/30 02:33:24	1.8
@@ -103,6 +103,14 @@
   </namespace>
 </object>
 
+<!-- NCBI COGs -->
+<object>
+  <regex>(?:[KC]OG|[kc]og):?\s*(\d{4})</regex>
+  <namespace>
+    <ns value="COGs">$1</ns>
+  </namespace>
+</object>
+
 <!-- Digital Object Identifier, with header -->
 <object>
   <regex>(?:DOI|doi|[Dd]igital\s+[Oo]bject\s+[Ii][Dd](?:entifier))\s*:?\s*(10\.\d+/[^%"\#\x20\t\r\n]+)</regex>
@@ -145,6 +153,13 @@
 
 <!-- an enzyme committee number -->
 <object>
+  <xpath>self::agave:gene//agave:classification[@system='EC']/@id</xpath>
+  <namespace>
+    <ns value="EC">.</ns>
+  </namespace>
+</object>
+
+<object>
   <!-- have the form '6.1.99.-', where '-' is a wildcard -->
   <regex>([1-6]\.(?:[0-9]{1,2}|-)(?:\.[0-9]{1,3}|-){2})</regex>
   <namespace>