[MOBY-guts] biomoby commit

[Eddie Kawas]

kawas
Thu Nov  6 13:32:33 EST 2008
Update of /home/repository/moby/moby-live/Perl/MOSES-MOBY/lib/MOSES/MOBY
In directory dev.open-bio.org:/tmp/cvs-serv25509/Perl/MOSES-MOBY/lib/MOSES/MOBY

Modified Files:
	Base.pm 
Log Message:
bug fixes:
   * swapped IO::Scalar with IO::String for performance reasons (still searching for better method)
   * applied patch to Utils.pm (thanks to Kenny Billiau)
   * MOSES::MOBY::Cache::Registries no longer does a file read each time a new Registries object is instantiated.
moby-live/Perl/MOSES-MOBY/lib/MOSES/MOBY Base.pm,1.5,1.6
===================================================================
RCS file: /home/repository/moby/moby-live/Perl/MOSES-MOBY/lib/MOSES/MOBY/Base.pm,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- /home/repository/moby/moby-live/Perl/MOSES-MOBY/lib/MOSES/MOBY/Base.pm	2008/10/30 21:26:38	1.5
+++ /home/repository/moby/moby-live/Perl/MOSES-MOBY/lib/MOSES/MOBY/Base.pm	2008/11/06 18:32:33	1.6
@@ -632,14 +632,14 @@
 my $DUMPER;
 BEGIN {
     use Dumpvalue;
-    use IO::Scalar;
+    use IO::String;
     $DUMPER = Dumpvalue->new();
 #    $DUMPER->set (veryCompact => 1);
 }
 sub as_string {
     my $self = shift;
     my $dump_str;
-    my $io = IO::Scalar->new (\$dump_str);
+    my $io = IO::String->new (\$dump_str);
     my $oio = select ($io);
     $DUMPER->dumpValue (\$self);
     select ($oio);