[MOBY-guts] biomoby commit

[Eddie Kawas]

kawas
Thu Nov  6 13:32:33 EST 2008
Update of /home/repository/moby/moby-live/Perl/MOSES-MOBY
In directory dev.open-bio.org:/tmp/cvs-serv25509/Perl/MOSES-MOBY

Modified Files:
	Makefile.PL Changes 
Log Message:
bug fixes:
   * swapped IO::Scalar with IO::String for performance reasons (still searching for better method)
   * applied patch to Utils.pm (thanks to Kenny Billiau)
   * MOSES::MOBY::Cache::Registries no longer does a file read each time a new Registries object is instantiated.
moby-live/Perl/MOSES-MOBY Makefile.PL,1.9,1.10 Changes,1.8,1.9
===================================================================
RCS file: /home/repository/moby/moby-live/Perl/MOSES-MOBY/Makefile.PL,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- /home/repository/moby/moby-live/Perl/MOSES-MOBY/Makefile.PL	2008/10/30 21:25:51	1.9
+++ /home/repository/moby/moby-live/Perl/MOSES-MOBY/Makefile.PL	2008/11/06 18:32:33	1.10
@@ -21,7 +21,7 @@
 	requires 'Log::Log4perl'    => 1.12;
 	requires 'Template'         => 1.11;
 	requires 'Config::Simple'   => 4.58;
-	requires 'IO::Stringy'      => 2.110;
+	requires 'IO::String'       => 1.08;
 	requires 'Unicode::String'  => 2.09;
 	requires 'File::HomeDir'    => 0.65;
 	requires 'File::ShareDir'   => 0.05;

===================================================================
RCS file: /home/repository/moby/moby-live/Perl/MOSES-MOBY/Changes,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -r1.8 -r1.9
--- /home/repository/moby/moby-live/Perl/MOSES-MOBY/Changes	2008/10/30 21:27:34	1.8
+++ /home/repository/moby/moby-live/Perl/MOSES-MOBY/Changes	2008/11/06 18:32:33	1.9
@@ -12,6 +12,14 @@
 	    for async modules.
 	  * added another service table for async services  
 	- added a missing use statement for DateTime in Base.pm
+	- swapped IO::Scalar with IO::String (for performance
+	  reasons)
+	- applied patch to Utils.pm (thanks to Kenny Billiau).
+	  patch caches file paths once found instead of looking
+	  repeatedly for them.
+	- MOSES::MOBY::Cache::Registries::init used to do a file
+	  read each time a new Registries object was instantiated.
+	  Not the case anymore.
 
 .86 Sun May 11 
 	- fixed a bug in one of the test cases.